RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 GET4Q7L5D6 327 aaPredicted RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 MORC1Q86VD1 984 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 NME9Q86XW9 330 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.41□□□□□ -1.7
SMG6-208ENST00000570874 THEMISQ8N1K5 641 aaPredicted RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 OTUD6BQ8N6M0 293 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 KHSRPQ92945 711 aaKnown RBP eCLIP4.41□□□□□ -1.7
SMG6-208ENST00000570874 NUDT16Q96DE0 195 aaKnown RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 CDCA7LQ96GN5 454 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 NAP1L4Q99733 375 aaKnown RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 QTRT2Q9H974 415 aaKnown RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 CEP126Q9P2H0 1117 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 CGNL1Q0VF96 1302 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 ABCA3Q99758 1704 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 POLR3AO14802 1390 aaPredicted RBP4.4□□□□□ -1.7
SMG6-208ENST00000570874 NINLQ9Y2I6 1382 aa4.4□□□□□ -1.7
SMG6-208ENST00000570874 SMG6Q86US8 1419 aaKnown RBP4.4□□□□□ -1.7
SMG6-208ENST00000570874 PHRF1Q9P1Y6 1649 aaKnown RBP4.4□□□□□ -1.7
SMG6-208ENST00000570874 GOLGA6CA6NDK9 693 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 GOLGA6BA6NDN3 693 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 POM121CA8CG34 1229 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 IRF6O14896 467 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 S100BP04271 92 aaPredicted RBP4.4□□□□□ -1.71
SMG6-208ENST00000570874 APPP05067 770 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 GOLGA6DP0CG33 693 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 VDRP11473 427 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 MAN1A1P33908 653 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 MTHFSP49914 203 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 HSPA2P54652 639 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 NOM1Q5C9Z4 860 aaKnown RBP4.4□□□□□ -1.71
SMG6-208ENST00000570874 ICE2Q659A1 982 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 CREBRFQ8IUR6 639 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 ZNF775Q96BV0 537 aaPredicted RBP4.4□□□□□ -1.71
SMG6-208ENST00000570874 ARMC5Q96C12 935 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 IRF2BPLQ9H1B7 796 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 SPC25Q9HBM1 224 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 GEMIN8Q9NWZ8 242 aaKnown RBP4.4□□□□□ -1.71
SMG6-208ENST00000570874 GOLGA6AQ9NYA3 693 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 HDAC5Q9UQL6 1122 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 COL4A3BPQ9Y5P4 624 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 SCINQ9Y6U3 715 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 KIF1AQ12756 1690 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 NSD2O96028 1365 aa4.4□□□□□ -1.71
SMG6-208ENST00000570874 USP6P35125 1406 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 EDC4Q6P2E9 1401 aaKnown RBP4.39□□□□□ -1.71
SMG6-208ENST00000570874 LMTK3Q96Q04 1460 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 KDM4FA0A1W2PPD8 638 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 GPR37O15354 613 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PRC1O43663 620 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 MS4A1P11836 297 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 ATP2B1P20020 1258 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 LAPTM4AQ15012 233 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 WDR43Q15061 677 aaKnown RBP eCLIP4.39□□□□□ -1.71
SMG6-208ENST00000570874 TCEAL1Q15170 157 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 TSNAXIP1Q2TAA8 658 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 NBPF9Q3BBW0 867 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 TMEM92Q6UXU6 159 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 GIGYF2Q6Y7W6 1299 aaKnown RBP4.39□□□□□ -1.71
SMG6-208ENST00000570874 HDGFL2Q7Z4V5 671 aaPredicted RBP4.39□□□□□ -1.71
SMG6-208ENST00000570874 ANKLE2Q86XL3 938 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 NLGN1Q8N2Q7 840 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PDILTQ8N807 584 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PMFBP1Q8TBY8 1022 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 OXER1Q8TDS5 423 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PIK3R5Q8WYR1 880 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 CEP63Q96MT8 703 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 INO80BQ9C086 356 aaPredicted RBP4.39□□□□□ -1.71
SMG6-208ENST00000570874 GDPD2Q9HCC8 539 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PRM3Q9NNZ6 103 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 PRR12Q9ULL5 1215 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 NUDCQ9Y266 331 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 CACNA1FO60840 1977 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 ACEP12821 1306 aa4.39□□□□□ -1.71
SMG6-208ENST00000570874 OVOS2A0A0J9YW53 1432 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 OVOS2Q6IE36 1432 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 COL18A1P39060 1754 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 APAF1O14727 1248 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 ATG7O95352 703 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 CD53P19397 219 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 PUS10Q3MIT2 529 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 CCDC174Q6PII3 467 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 DDX46Q7L014 1031 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 DHX38Q92620 1227 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 PAGR1Q9BTK6 254 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 RSPH9Q9H1X1 276 aaPredicted RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 SNRKQ9NRH2 765 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 MAP3K20Q9NYL2 800 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 TCEAL9Q9UHQ7 104 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 NRBP1Q9UHY1 535 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 G3BP2Q9UN86 482 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 RRP7AQ9Y3A4 280 aaKnown RBP4.38□□□□□ -1.71
SMG6-208ENST00000570874 INSRP06213 1382 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 PIK3R4Q99570 1358 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 SSH2Q76I76 1423 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 ADGRL3Q9HAR2 1447 aa4.38□□□□□ -1.71
SMG6-208ENST00000570874 KAT6BQ8WYB5 2073 aa4.37□□□□□ -1.71
SMG6-208ENST00000570874 CDK12Q9NYV4 1490 aaPredicted RBP4.37□□□□□ -1.71
SMG6-208ENST00000570874 BICDL2A1A5D9 508 aa4.37□□□□□ -1.71
SMG6-208ENST00000570874 ANKRD33BA6NCL7 494 aa4.37□□□□□ -1.71
SMG6-208ENST00000570874 HRO43593 1189 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms