RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ARXQ96QS3 562 aa11.85□□□□□ -0.51
VPS35-211ENST00000569950 NIP7Q9Y221 180 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS35-211ENST00000569950 TAF1P21675 1872 aa11.85□□□□□ -0.51
VPS35-211ENST00000569950 DDX58O95786 925 aaKnown RBP11.84□□□□□ -0.51
VPS35-211ENST00000569950 INTS3Q68E01 1043 aaKnown RBP11.84□□□□□ -0.51
VPS35-211ENST00000569950 PRR5LQ6MZQ0 368 aa11.84□□□□□ -0.51
VPS35-211ENST00000569950 BICDL1Q6ZP65 573 aa11.84□□□□□ -0.51
VPS35-211ENST00000569950 LINS1Q8NG48 757 aa11.84□□□□□ -0.51
VPS35-211ENST00000569950 RIC1Q4ADV7 1423 aa11.84□□□□□ -0.51
VPS35-211ENST00000569950 SERPINB2P05120 415 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 GCKRQ14397 625 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 ZKSCAN2Q63HK3 967 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 C3orf67Q6ZVT6 689 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 FRAT1Q92837 279 aaPredicted RBP11.83□□□□□ -0.52
VPS35-211ENST00000569950 ZNF652Q9Y2D9 606 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 UTYO14607 1347 aa11.83□□□□□ -0.52
VPS35-211ENST00000569950 H7C1W4 665 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 RRP1P56182 461 aaKnown RBP11.82□□□□□ -0.52
VPS35-211ENST00000569950 HSP90AB3PQ58FF7 597 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 CCDC24Q8N4L8 307 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 TMEM57Q8N5G2 664 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 CCDC191Q8NCU4 936 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 PANK1Q8TE04 598 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 CLUAP1Q96AJ1 413 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 KAZALD1Q96I82 304 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 SETDB2Q96T68 719 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 API5Q9BZZ5 524 aaKnown RBP11.82□□□□□ -0.52
VPS35-211ENST00000569950 USP44Q9H0E7 712 aa11.82□□□□□ -0.52
VPS35-211ENST00000569950 KLRG2A4D1S0 409 aaPredicted RBP11.81□□□□□ -0.52
VPS35-211ENST00000569950 ALDH1L1O75891 902 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 ERFEQ4G0M1 354 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 PARP10Q53GL7 1025 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 SLC10A5Q5PT55 438 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 NPM2Q86SE8 214 aaKnown RBP11.81□□□□□ -0.52
VPS35-211ENST00000569950 NUTM1Q86Y26 1132 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 JARID2Q92833 1246 aaPredicted RBP11.81□□□□□ -0.52
VPS35-211ENST00000569950 SPON1Q9HCB6 807 aa11.81□□□□□ -0.52
VPS35-211ENST00000569950 CACNA1SQ13698 1873 aa11.8□□□□□ -0.52
VPS35-211ENST00000569950 PCCAP05165 728 aaPredicted RBP11.8□□□□□ -0.52
VPS35-211ENST00000569950 NBPF7P0C2Y1 421 aaPredicted RBP11.8□□□□□ -0.52
VPS35-211ENST00000569950 SLC4A10Q6U841 1118 aa11.8□□□□□ -0.52
VPS35-211ENST00000569950 CNKSR2Q8WXI2 1034 aa11.8□□□□□ -0.52
VPS35-211ENST00000569950 FAM89AQ96GI7 184 aa11.8□□□□□ -0.52
VPS35-211ENST00000569950 CWC25Q9NXE8 425 aaPredicted RBP11.8□□□□□ -0.52
VPS35-211ENST00000569950 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 IPO8O15397 1037 aaKnown RBP11.79□□□□□ -0.52
VPS35-211ENST00000569950 EPHA10Q5JZY3 1008 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 NBPF5PQ86XG9 351 aaPredicted RBP11.79□□□□□ -0.52
VPS35-211ENST00000569950 DZIP1LQ8IYY4 767 aaKnown RBP11.79□□□□□ -0.52
VPS35-211ENST00000569950 ZBTB38Q8NAP3 1195 aaPredicted RBP11.79□□□□□ -0.52
VPS35-211ENST00000569950 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
VPS35-211ENST00000569950 SRCIN1Q9C0H9 1055 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 CDHR2Q9BYE9 1310 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 A0A1B0GUL6 1792 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 SLX4Q8IY92 1834 aa11.79□□□□□ -0.52
VPS35-211ENST00000569950 GRM8O00222 908 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 KCNA3P22001 575 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 CCT4P50991 539 aaKnown RBP11.78□□□□□ -0.52
VPS35-211ENST00000569950 NEXNQ0ZGT2 675 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 PDE3AQ14432 1141 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 CRY2Q49AN0 593 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 CNBD1Q8NA66 436 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 MEIS3Q99687 375 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 TRMT112Q9UI30 125 aaKnown RBP11.78□□□□□ -0.52
VPS35-211ENST00000569950 SUPT16HQ9Y5B9 1047 aaKnown RBP11.78□□□□□ -0.52
VPS35-211ENST00000569950 PARP3Q9Y6F1 533 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 SPEF2Q9C093 1822 aa11.78□□□□□ -0.52
VPS35-211ENST00000569950 LRRC37AA6NMS7 1700 aa11.77□□□□□ -0.52
VPS35-211ENST00000569950 UTRNP46939 3433 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 ZBTB7BO15156 539 aaPredicted RBP11.77□□□□□ -0.53
VPS35-211ENST00000569950 HCLS1P14317 486 aaPredicted RBP11.77□□□□□ -0.53
VPS35-211ENST00000569950 FOXO4P98177 505 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 RTL5Q5HYW3 569 aaPredicted RBP11.77□□□□□ -0.53
VPS35-211ENST00000569950 TPTE2Q6XPS3 522 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 UBE3BQ7Z3V4 1068 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 SLC51AQ86UW1 340 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 PLA2G12BQ9BX93 195 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 SH3TC1Q8TE82 1336 aa11.77□□□□□ -0.53
VPS35-211ENST00000569950 ARFGEF1Q9Y6D6 1849 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 POLD1P28340 1107 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 HOXD11P31277 338 aaPredicted RBP11.76□□□□□ -0.53
VPS35-211ENST00000569950 PPP1R42Q7Z4L9 355 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 ANKRD44Q8N8A2 993 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 NLGN2Q8NFZ4 835 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 SUCLG2Q96I99 432 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 BRIP1Q9BX63 1249 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 NYXQ9GZU5 481 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 LTBP1Q14766 1721 aa11.76□□□□□ -0.53
VPS35-211ENST00000569950 IRS4O14654 1257 aaPredicted RBP11.75□□□□□ -0.53
VPS35-211ENST00000569950 CHRNA5P30532 468 aa11.75□□□□□ -0.53
VPS35-211ENST00000569950 MVPQ14764 893 aaKnown RBP11.75□□□□□ -0.53
VPS35-211ENST00000569950 FHDC1Q9C0D6 1143 aaPredicted RBP11.75□□□□□ -0.53
VPS35-211ENST00000569950 COG6Q9Y2V7 657 aa11.75□□□□□ -0.53
VPS35-211ENST00000569950 CD2APQ9Y5K6 639 aa11.75□□□□□ -0.53
VPS35-211ENST00000569950 SNED1Q8TER0 1413 aa11.75□□□□□ -0.53
VPS35-211ENST00000569950 CSF1RP07333 972 aa11.74□□□□□ -0.53
VPS35-211ENST00000569950 SRGNP10124 158 aa11.74□□□□□ -0.53
VPS35-211ENST00000569950 SF3B3Q15393 1217 aaKnown RBP11.74□□□□□ -0.53
VPS35-211ENST00000569950 RABL6Q3YEC7 729 aaPredicted RBP11.74□□□□□ -0.53
VPS35-211ENST00000569950 TTLL11Q8NHH1 800 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 709.4 ms