RNA–Protein interactions for RNA: ENST00000569518.5

VCPKMT-205, Transcript of valosin containing protein lysine methyltransferase, human

TSL 2

Gene VCPKMT, Length 1,827 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VCPKMT-205	ENST00000569518	TBC1D32	Q96NH3	1257 aa		27.77	■■■□□ 2.04
VCPKMT-205	ENST00000569518	UPF2	Q9HAU5	1272 aa	Known RBP	27.77	■■■□□ 2.04
VCPKMT-205	ENST00000569518	ERVV-1	B6SEH8	477 aa		27.76	■■■□□ 2.04
VCPKMT-205	ENST00000569518	SDS	P20132	328 aa		27.76	■■■□□ 2.04
VCPKMT-205	ENST00000569518	PTF1A	Q7RTS3	328 aa		27.76	■■■□□ 2.04
VCPKMT-205	ENST00000569518	OS9	Q13438	667 aa	Predicted RBP	27.76	■■■□□ 2.03
VCPKMT-205	ENST00000569518	COPRS	Q9NQ92	184 aa		27.76	■■■□□ 2.03
VCPKMT-205	ENST00000569518	HSP90AB3P	Q58FF7	597 aa		27.74	■■■□□ 2.03
VCPKMT-205	ENST00000569518	DZIP3	Q86Y13	1208 aa	Known RBP	27.74	■■■□□ 2.03
VCPKMT-205	ENST00000569518	TSHZ3	Q63HK5	1081 aa		27.74	■■■□□ 2.03
VCPKMT-205	ENST00000569518	SASH1	O94885	1247 aa		27.73	■■■□□ 2.03
VCPKMT-205	ENST00000569518	MFAP1	P55081	439 aa	Known RBP	27.73	■■■□□ 2.03
VCPKMT-205	ENST00000569518	SEPT12	Q8IYM1	358 aa		27.73	■■■□□ 2.03
VCPKMT-205	ENST00000569518	USP42	Q9H9J4	1324 aa	Known RBP	27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	PCCA	P05165	728 aa	Predicted RBP	27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	PTPN12	Q05209	780 aa	Known RBP	27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	LMBR1L	Q6UX01	489 aa		27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	NUTM1	Q86Y26	1132 aa		27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	ARX	Q96QS3	562 aa		27.72	■■■□□ 2.03
VCPKMT-205	ENST00000569518	G3BP1	Q13283	466 aa	Known RBP eCLIP	27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	FAM182B	Q5T319	152 aa		27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	KLHDC4	Q8TBB5	520 aa		27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	QTRT2	Q9H974	415 aa	Known RBP	27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	TBC1D2B	Q9UPU7	963 aa		27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	RTL5	Q5HYW3	569 aa	Predicted RBP	27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	NLRP10	Q86W26	655 aa		27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	DDRGK1	Q96HY6	314 aa		27.71	■■■□□ 2.03
VCPKMT-205	ENST00000569518	CLASRP	Q8N2M8	674 aa	Known RBP	27.7	■■■□□ 2.02
VCPKMT-205	ENST00000569518	LY75	O60449	1722 aa		27.7	■■■□□ 2.02
VCPKMT-205	ENST00000569518	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	LINC00116	Q8NCU8	138 aa		27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	PI4K2B	Q8TCG2	481 aa		27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	PLA2G12B	Q9BX93	195 aa		27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	SIL1	Q9H173	461 aa		27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	27.69	■■■□□ 2.02
VCPKMT-205	ENST00000569518	BCOR	Q6W2J9	1755 aa		27.68	■■■□□ 2.02
VCPKMT-205	ENST00000569518	CDHR2	Q9BYE9	1310 aa		27.68	■■■□□ 2.02
VCPKMT-205	ENST00000569518	GPT	P24298	496 aa		27.67	■■■□□ 2.02
VCPKMT-205	ENST00000569518	ZNF34	Q8IZ26	560 aa		27.67	■■■□□ 2.02
VCPKMT-205	ENST00000569518	C22orf23	Q9BZE7	217 aa		27.67	■■■□□ 2.02
VCPKMT-205	ENST00000569518	TTC41P	Q6P2S7	1318 aa		27.66	■■■□□ 2.02
VCPKMT-205	ENST00000569518	CNTNAP4	Q9C0A0	1308 aa		27.66	■■■□□ 2.02
VCPKMT-205	ENST00000569518	CAMTA2	O94983	1202 aa		27.66	■■■□□ 2.02
VCPKMT-205	ENST00000569518	FAM89A	Q96GI7	184 aa		27.65	■■■□□ 2.02
VCPKMT-205	ENST00000569518	UBN2	Q6ZU65	1347 aa		27.65	■■■□□ 2.02
VCPKMT-205	ENST00000569518	BRWD3	Q6RI45	1802 aa		27.65	■■■□□ 2.02
VCPKMT-205	ENST00000569518	EAF2	Q96CJ1	260 aa	Predicted RBP	27.64	■■■□□ 2.01
VCPKMT-205	ENST00000569518	AACS	Q86V21	672 aa		27.63	■■■□□ 2.01
VCPKMT-205	ENST00000569518	TAF1L	Q8IZX4	1826 aa		27.63	■■■□□ 2.01
VCPKMT-205	ENST00000569518	MYH3	P11055	1940 aa		27.63	■■■□□ 2.01
VCPKMT-205	ENST00000569518	EIF5B	O60841	1220 aa	Known RBP	27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	RBM25	P49756	843 aa	Known RBP	27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	AK9	Q5TCS8	1911 aa		27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	IFIT2	P09913	472 aa	Known RBP	27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	KCNQ4	P56696	695 aa		27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	CHMP3	Q9Y3E7	222 aa		27.62	■■■□□ 2.01
VCPKMT-205	ENST00000569518	CSF1R	P07333	972 aa		27.61	■■■□□ 2.01
VCPKMT-205	ENST00000569518	CASC1	Q6TDU7	716 aa		27.61	■■■□□ 2.01
VCPKMT-205	ENST00000569518	RC3H1	Q5TC82	1133 aa	Known RBP	27.6	■■■□□ 2.01
VCPKMT-205	ENST00000569518	SYNE4	Q8N205	404 aa		27.6	■■■□□ 2.01
VCPKMT-205	ENST00000569518	ECHDC1	Q9NTX5	307 aa		27.6	■■■□□ 2.01
VCPKMT-205	ENST00000569518	SCN7A	Q01118	1682 aa		27.6	■■■□□ 2.01
VCPKMT-205	ENST00000569518	GLRX3	O76003	335 aa	Known RBP	27.59	■■■□□ 2.01
VCPKMT-205	ENST00000569518	ATG9A	Q7Z3C6	839 aa		27.59	■■■□□ 2.01
VCPKMT-205	ENST00000569518	TFCP2	Q12800	502 aa		27.58	■■■□□ 2.01
VCPKMT-205	ENST00000569518	GPATCH3	Q96I76	525 aa		27.58	■■■□□ 2.01
VCPKMT-205	ENST00000569518	BCL11B	Q9C0K0	894 aa	Predicted RBP	27.58	■■■□□ 2.01
VCPKMT-205	ENST00000569518	TRMT112	Q9UI30	125 aa	Known RBP	27.58	■■■□□ 2.01
VCPKMT-205	ENST00000569518	CCNL1	Q9UK58	526 aa	Predicted RBP	27.57	■■■□□ 2
VCPKMT-205	ENST00000569518	TRIM6-TRIM34	B2RNG4	842 aa		27.57	■■■□□ 2
VCPKMT-205	ENST00000569518	ERC2	O15083	957 aa		27.57	■■■□□ 2
VCPKMT-205	ENST00000569518	TLR7	Q9NYK1	1049 aa	Known RBP	27.57	■■■□□ 2
VCPKMT-205	ENST00000569518	CIAO1	O76071	339 aa		27.56	■■■□□ 2
VCPKMT-205	ENST00000569518	IRS4	O14654	1257 aa	Predicted RBP	27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	RGL2	O15211	777 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	TNNI3K	Q59H18	835 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	RILPL2	Q969X0	211 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	CCDC8	Q9H0W5	538 aa	Predicted RBP	27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	FPGT-TNNI3K	V9GXZ4	949 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	LAMB2	P55268	1798 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	EYA2	O00167	538 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	CHML	P26374	656 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	PARP10	Q53GL7	1025 aa		27.55	■■■□□ 2
VCPKMT-205	ENST00000569518	IL15	P40933	162 aa	Predicted RBP	27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	CTSW	P56202	376 aa		27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	SUSD4	Q5VX71	490 aa		27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	CLEC4G	Q6UXB4	293 aa		27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	TTLL11	Q8NHH1	800 aa		27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	ZNF594	Q96JF6	807 aa	Predicted RBP	27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	FBXO3	Q9UK99	471 aa		27.54	■■■□□ 2
VCPKMT-205	ENST00000569518	C4B	P0C0L5	1744 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	RPS6KA4	O75676	772 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	CCDC57	Q2TAC2	916 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	KRT27	Q7Z3Y8	459 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	AK7	Q96M32	723 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	ZNF652	Q9Y2D9	606 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	DDX60	Q8IY21	1712 aa	Known RBP	27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	FAM196A	Q6ZSG2	479 aa		27.53	■■■□□ 2
VCPKMT-205	ENST00000569518	PDE8A	O60658	829 aa		27.52	■■■□□ 2
VCPKMT-205	ENST00000569518	LRRC24	Q50LG9	513 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms