RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 ABCC12Q96J65 1359 aa12.62□□□□□ -0.39
CLN6-209ENST00000569336 FAM177BA6PVY3 158 aa12.62□□□□□ -0.39
CLN6-209ENST00000569336 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
CLN6-209ENST00000569336 TTLL6Q8N841 843 aa12.62□□□□□ -0.39
CLN6-209ENST00000569336 TCIRG1Q13488 830 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 STYK1Q6J9G0 422 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 TSPYL6Q8N831 410 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 CNKSR1Q969H4 720 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 MASTLQ96GX5 879 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 A0A1B0GUL6 1792 aa12.61□□□□□ -0.39
CLN6-209ENST00000569336 NTSR2O95665 410 aa12.6□□□□□ -0.39
CLN6-209ENST00000569336 SRGNP10124 158 aa12.6□□□□□ -0.39
CLN6-209ENST00000569336 NPR1P16066 1061 aa12.6□□□□□ -0.39
CLN6-209ENST00000569336 RIC3Q7Z5B4 369 aa12.6□□□□□ -0.39
CLN6-209ENST00000569336 CCDC24Q8N4L8 307 aa12.6□□□□□ -0.39
CLN6-209ENST00000569336 ZNF622Q969S3 477 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLN6-209ENST00000569336 UTP14AQ9BVJ6 771 aaKnown RBP12.6□□□□□ -0.39
CLN6-209ENST00000569336 ADCY9O60503 1353 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 E9PSI1 815 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 EXOSC9Q06265 439 aaKnown RBP12.59□□□□□ -0.39
CLN6-209ENST00000569336 SOGA3Q5TF21 947 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 SUSD4Q5VX71 490 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 ARHGAP27Q6ZUM4 889 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 NUTM1Q86Y26 1132 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 SH3TC1Q8TE82 1336 aa12.59□□□□□ -0.39
CLN6-209ENST00000569336 SCN4AP35499 1836 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.4
CLN6-209ENST00000569336 ERFEQ4G0M1 354 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 COL13A1Q5TAT6 717 aaPredicted RBP12.58□□□□□ -0.4
CLN6-209ENST00000569336 NLRP10Q86W26 655 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 TNS4Q8IZW8 715 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 MIER1Q8N108 512 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 RPGRQ92834 1020 aaKnown RBP12.58□□□□□ -0.4
CLN6-209ENST00000569336 PHAXQ9H814 394 aaKnown RBP12.58□□□□□ -0.4
CLN6-209ENST00000569336 PSME4Q14997 1843 aa12.58□□□□□ -0.4
CLN6-209ENST00000569336 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
CLN6-209ENST00000569336 ALDH1B1P30837 517 aa12.57□□□□□ -0.4
CLN6-209ENST00000569336 APLP1P51693 650 aa12.57□□□□□ -0.4
CLN6-209ENST00000569336 CRY2Q49AN0 593 aa12.57□□□□□ -0.4
CLN6-209ENST00000569336 PRPF40BQ6NWY9 871 aaKnown RBP12.57□□□□□ -0.4
CLN6-209ENST00000569336 TRMT112Q9UI30 125 aaKnown RBP12.57□□□□□ -0.4
CLN6-209ENST00000569336 LTBP1Q14766 1721 aa12.57□□□□□ -0.4
CLN6-209ENST00000569336 SLC4A2P04920 1241 aa12.56□□□□□ -0.4
CLN6-209ENST00000569336 PRELPP51888 382 aa12.56□□□□□ -0.4
CLN6-209ENST00000569336 NEXNQ0ZGT2 675 aa12.56□□□□□ -0.4
CLN6-209ENST00000569336 TRIM28Q13263 835 aaKnown RBP12.56□□□□□ -0.4
CLN6-209ENST00000569336 NLRP3Q96P20 1036 aa12.56□□□□□ -0.4
CLN6-209ENST00000569336 ISCA1Q9BUE6 129 aa12.56□□□□□ -0.4
CLN6-209ENST00000569336 SPINK5Q9NQ38 1064 aaPredicted RBP12.56□□□□□ -0.4
CLN6-209ENST00000569336 ZC3H4Q9UPT8 1303 aaKnown RBP12.56□□□□□ -0.4
CLN6-209ENST00000569336 VAMP4O75379 141 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 FLIIQ13045 1269 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 FKBP5Q13451 457 aaPredicted RBP12.55□□□□□ -0.4
CLN6-209ENST00000569336 KSR2Q6VAB6 950 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 CCDC191Q8NCU4 936 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 MYD88Q99836 296 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 MAP3K2Q9Y2U5 619 aa12.55□□□□□ -0.4
CLN6-209ENST00000569336 PI4KAP2A4QPH2 592 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 ATP5J2-PTCD1G3V325 749 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 CCDC93Q567U6 631 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 SLC10A5Q5PT55 438 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 PI4KAP1Q8N8J0 262 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 ZNF428Q96B54 188 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 RBM17Q96I25 401 aaKnown RBP12.54□□□□□ -0.4
CLN6-209ENST00000569336 METTL22Q9BUU2 404 aaPredicted RBP12.54□□□□□ -0.4
CLN6-209ENST00000569336 CWC25Q9NXE8 425 aaPredicted RBP12.54□□□□□ -0.4
CLN6-209ENST00000569336 LTBP3Q9NS15 1303 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 MYH13Q9UKX3 1938 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 WDR90Q96KV7 1748 aa12.54□□□□□ -0.4
CLN6-209ENST00000569336 TCERG1O14776 1098 aaKnown RBP12.53□□□□□ -0.4
CLN6-209ENST00000569336 C21orf2O43822 256 aa12.53□□□□□ -0.4
CLN6-209ENST00000569336 LMNB1P20700 586 aa12.53□□□□□ -0.4
CLN6-209ENST00000569336 HOXA10P31260 410 aaPredicted RBP12.53□□□□□ -0.4
CLN6-209ENST00000569336 SLFN5Q08AF3 891 aa12.53□□□□□ -0.4
CLN6-209ENST00000569336 CRAMP1Q96RY5 1269 aa12.53□□□□□ -0.4
CLN6-209ENST00000569336 TAOK3Q9H2K8 898 aa12.53□□□□□ -0.4
CLN6-209ENST00000569336 CT47B1P0C2W7 299 aaPredicted RBP12.52□□□□□ -0.41
CLN6-209ENST00000569336 GRIPAP1Q4V328 841 aa12.52□□□□□ -0.41
CLN6-209ENST00000569336 CC2D2BQ6DHV5 1058 aa12.52□□□□□ -0.41
CLN6-209ENST00000569336 ZBTB38Q8NAP3 1195 aaPredicted RBP12.52□□□□□ -0.41
CLN6-209ENST00000569336 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.41
CLN6-209ENST00000569336 RNF181Q9P0P0 153 aa12.52□□□□□ -0.41
CLN6-209ENST00000569336 PCCAP05165 728 aaPredicted RBP12.51□□□□□ -0.41
CLN6-209ENST00000569336 HCLS1P14317 486 aaPredicted RBP12.51□□□□□ -0.41
CLN6-209ENST00000569336 RASSF7Q02833 373 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 C9orf131Q5VYM1 1079 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 DDX46Q7L014 1031 aaKnown RBP12.51□□□□□ -0.41
CLN6-209ENST00000569336 G2E3Q7L622 706 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 RTKN2Q8IZC4 609 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 DNAAF4Q8WXU2 420 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 FAM89AQ96GI7 184 aa12.51□□□□□ -0.41
CLN6-209ENST00000569336 ZNF219Q9P2Y4 722 aaPredicted RBP12.51□□□□□ -0.41
CLN6-209ENST00000569336 NFKBIEO00221 500 aa12.5□□□□□ -0.41
CLN6-209ENST00000569336 IRS4O14654 1257 aaPredicted RBP12.5□□□□□ -0.41
CLN6-209ENST00000569336 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
CLN6-209ENST00000569336 HNRNPUQ00839 825 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLN6-209ENST00000569336 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
CLN6-209ENST00000569336 DNAJC5GQ8N7S2 189 aa12.5□□□□□ -0.41
CLN6-209ENST00000569336 ABCC4O15439 1325 aa12.5□□□□□ -0.41
CLN6-209ENST00000569336 CDHR2Q9BYE9 1310 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms