RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 PDAP1Q13442 181 aaKnown RBP13.26□□□□□ -0.29
CDH3-210ENST00000569117 KSR2Q6VAB6 950 aa13.26□□□□□ -0.29
CDH3-210ENST00000569117 PI4KAP1Q8N8J0 262 aa13.26□□□□□ -0.29
CDH3-210ENST00000569117 USP42Q9H9J4 1324 aaKnown RBP13.26□□□□□ -0.29
CDH3-210ENST00000569117 IBTKQ9P2D0 1353 aaPredicted RBP13.26□□□□□ -0.29
CDH3-210ENST00000569117 PNPLA7Q6ZV29 1317 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 ERVV-1B6SEH8 477 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 PHF14O94880 888 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 CAMTA2O94983 1202 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 MS4A1P11836 297 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 PDE3AQ14432 1141 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 SLC15A2Q16348 729 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 ANKRD13DQ6ZTN6 518 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 FTSJ3Q8IY81 847 aaKnown RBP13.25□□□□□ -0.29
CDH3-210ENST00000569117 DNAAF4Q8WXU2 420 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 STK32BQ9NY57 414 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 TFCP2L1Q9NZI6 479 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 TNNQ9UQP3 1299 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 MAP3K2Q9Y2U5 619 aa13.25□□□□□ -0.29
CDH3-210ENST00000569117 F6X3S4 739 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 TRAPPC3LQ5T215 181 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 RIC3Q7Z5B4 369 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 DZIP1LQ8IYY4 767 aaKnown RBP13.24□□□□□ -0.29
CDH3-210ENST00000569117 FLAD1Q8NFF5 587 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 NARFQ9UHQ1 456 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 LAMB2P55268 1798 aa13.24□□□□□ -0.29
CDH3-210ENST00000569117 RLBP1P12271 317 aa13.23□□□□□ -0.29
CDH3-210ENST00000569117 GIGYF2Q6Y7W6 1299 aaKnown RBP13.23□□□□□ -0.29
CDH3-210ENST00000569117 SMIM5Q71RC9 77 aa13.23□□□□□ -0.29
CDH3-210ENST00000569117 ARHGEF1Q92888 912 aaKnown RBP13.23□□□□□ -0.29
CDH3-210ENST00000569117 METTL22Q9BUU2 404 aaPredicted RBP13.23□□□□□ -0.29
CDH3-210ENST00000569117 TBC1D2BQ9UPU7 963 aa13.23□□□□□ -0.29
CDH3-210ENST00000569117 ZNF652Q9Y2D9 606 aa13.23□□□□□ -0.29
CDH3-210ENST00000569117 RFC4P35249 363 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 CCT4P50991 539 aaKnown RBP13.22□□□□□ -0.29
CDH3-210ENST00000569117 HSP90AB3PQ58FF7 597 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 C20orf194Q5TEA3 1177 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 INTS3Q68E01 1043 aaKnown RBP13.22□□□□□ -0.29
CDH3-210ENST00000569117 CLEC4GQ6UXB4 293 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 ZC3H15Q8WU90 426 aaKnown RBP13.22□□□□□ -0.29
CDH3-210ENST00000569117 CLUAP1Q96AJ1 413 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 MFRPQ9BY79 579 aa13.22□□□□□ -0.29
CDH3-210ENST00000569117 TSPYL2Q9H2G4 693 aaPredicted RBP13.22□□□□□ -0.29
CDH3-210ENST00000569117 ZPR1O75312 459 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 NEXNQ0ZGT2 675 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 HLFQ16534 295 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 BEND3Q5T5X7 828 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 USPL1Q5W0Q7 1092 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 SLC4A10Q6U841 1118 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 LINS1Q8NG48 757 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 PANK1Q8TE04 598 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 BCL2L12Q9HB09 334 aa13.21□□□□□ -0.29
CDH3-210ENST00000569117 SRP68Q9UHB9 627 aaKnown RBP13.21□□□□□ -0.29
CDH3-210ENST00000569117 NRXN2Q9P2S2 1712 aa13.21□□□□□ -0.3
CDH3-210ENST00000569117 ALDH1L1O75891 902 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 TCIRG1Q13488 830 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 MVPQ14764 893 aaKnown RBP13.2□□□□□ -0.3
CDH3-210ENST00000569117 COL23A1Q86Y22 540 aaPredicted RBP13.2□□□□□ -0.3
CDH3-210ENST00000569117 MYD88Q99836 296 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 ISCA1Q9BUE6 129 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 SRCIN1Q9C0H9 1055 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 DAXXQ9UER7 740 aaPredicted RBP13.2□□□□□ -0.3
CDH3-210ENST00000569117 PCDHB8Q9UN66 801 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 PCDHB13Q9Y5F0 798 aa13.2□□□□□ -0.3
CDH3-210ENST00000569117 NEURL1BA8MQ27 555 aa13.19□□□□□ -0.3
CDH3-210ENST00000569117 IGKV5-2P06315 115 aa13.19□□□□□ -0.3
CDH3-210ENST00000569117 GYS1P13807 737 aa13.19□□□□□ -0.3
CDH3-210ENST00000569117 TRIM28Q13263 835 aaKnown RBP13.19□□□□□ -0.3
CDH3-210ENST00000569117 ITPRIPQ8IWB1 547 aa13.19□□□□□ -0.3
CDH3-210ENST00000569117 HOMEZQ8IX15 550 aa13.19□□□□□ -0.3
CDH3-210ENST00000569117 DDX60Q8IY21 1712 aaKnown RBP13.19□□□□□ -0.3
CDH3-210ENST00000569117 UBN2Q6ZU65 1347 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 MYH3P11055 1940 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 CWF19L2Q2TBE0 894 aaKnown RBP13.18□□□□□ -0.3
CDH3-210ENST00000569117 ZNF34Q8IZ26 560 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 CCDC191Q8NCU4 936 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 DDX19BQ9UMR2 479 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 COG6Q9Y2V7 657 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 CARMIL3Q8ND23 1372 aa13.18□□□□□ -0.3
CDH3-210ENST00000569117 ATP5J2-PTCD1G3V325 749 aa13.17□□□□□ -0.3
CDH3-210ENST00000569117 NEFLP07196 543 aa13.17□□□□□ -0.3
CDH3-210ENST00000569117 E2F4Q16254 413 aa13.17□□□□□ -0.3
CDH3-210ENST00000569117 CRBNQ96SW2 442 aa13.17□□□□□ -0.3
CDH3-210ENST00000569117 GPTP24298 496 aa13.16□□□□□ -0.3
CDH3-210ENST00000569117 PARP10Q53GL7 1025 aa13.16□□□□□ -0.3
CDH3-210ENST00000569117 TBC1D9BQ66K14 1250 aa13.16□□□□□ -0.3
CDH3-210ENST00000569117 NLRP10Q86W26 655 aa13.16□□□□□ -0.3
CDH3-210ENST00000569117 CWC25Q9NXE8 425 aaPredicted RBP13.16□□□□□ -0.3
CDH3-210ENST00000569117 NIP7Q9Y221 180 aaKnown RBP eCLIP13.16□□□□□ -0.3
CDH3-210ENST00000569117 UTYO14607 1347 aa13.15□□□□□ -0.3
CDH3-210ENST00000569117 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
CDH3-210ENST00000569117 PSEN1P49768 467 aa13.15□□□□□ -0.3
CDH3-210ENST00000569117 IRX6P78412 446 aaPredicted RBP13.15□□□□□ -0.3
CDH3-210ENST00000569117 GCKRQ14397 625 aa13.15□□□□□ -0.3
CDH3-210ENST00000569117 SLC16A10Q8TF71 515 aa13.15□□□□□ -0.3
CDH3-210ENST00000569117 TNRC6CQ9HCJ0 1690 aaKnown RBP13.15□□□□□ -0.31
CDH3-210ENST00000569117 RIC1Q4ADV7 1423 aa13.14□□□□□ -0.31
CDH3-210ENST00000569117 GRM8O00222 908 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms