RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, human

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS35-208	ENST00000568612	PTCD1	O75127	700 aa	Known RBP	4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	EPB42	P16452	691 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	IDH3A	P50213	366 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	COX20	Q5RI15	118 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	C16orf46	Q6P387	395 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	C1orf229	Q6ZS94	237 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	CAPN12	Q6ZSI9	719 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	SYT9	Q86SS6	491 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	BHMT	Q93088	406 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	PNMA5	Q96PV4	448 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	SLC30A3	Q99726	388 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	IGFLR1	Q9H665	355 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	LRFN2	Q9ULH4	789 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	BCS1L	Q9Y276	419 aa		4.91	□□□□□ -1.62
VPS35-208	ENST00000568612	SHISA8	B8ZZ34	492 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	MICAL2	O94851	1124 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	ARSD	P51689	593 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	IER5	Q5VY09	327 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	SLCO4C1	Q6ZQN7	724 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	KRT25	Q7Z3Z0	450 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	PODN	Q7Z5L7	613 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	TREML1	Q86YW5	311 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	MYO19	Q96H55	970 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	SAP130	Q9H0E3	1048 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	SLAIN2	Q9P270	581 aa		4.9	□□□□□ -1.63
VPS35-208	ENST00000568612	TMEM88B	A6NKF7	163 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	RNF225	M0QZC1	329 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	EPX	P11678	715 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	ALAS2	P22557	587 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	BRD2	P25440	801 aa	Known RBP	4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	SCNN1A	P37088	669 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	FCHSD1	Q86WN1	690 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	RGL4	Q8IZJ4	473 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	SCARF2	Q96GP6	870 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	ANP32E	Q9BTT0	268 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	SEPT3	Q9UH03	358 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	USP20	Q9Y2K6	914 aa		4.89	□□□□□ -1.63
VPS35-208	ENST00000568612	INPP5B	P32019	993 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	IRS1	P35568	1242 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	KCNQ4	P56696	695 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	CMTR1	Q8N1G2	835 aa	Known RBP	4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	COL26A1	Q96A83	441 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	UBE2O	Q9C0C9	1292 aa	Known RBP	4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	AVEN	Q9NQS1	362 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	DMGDH	Q9UI17	866 aa	Known RBP	4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	KLF15	Q9UIH9	416 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	CNTNAP5	Q8WYK1	1306 aa		4.88	□□□□□ -1.63
VPS35-208	ENST00000568612	PHF20L1	A8MW92	1017 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	NFKB1	P19838	968 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	SNRPN	P63162	240 aa	Known RBP	4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	CCIN	Q13939	588 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	CHSY3	Q70JA7	882 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	BEND7	Q8N7W2	519 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	BTBD6	Q96KE9	485 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	LRRC4B	Q9NT99	713 aa		4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	RTCB	Q9Y3I0	505 aa	Known RBP	4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS35-208	ENST00000568612	ELOA3C	A0A087WX78	387 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	SIN3B	O75182	1162 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ABL1	P00519	1130 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	SSFA2	P28290	1259 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ADH7	P40394	386 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ELOA3B	Q3SY89	546 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ETFBKMT	Q8IXQ9	262 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	ELOA3	Q8NG57	546 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	GSX2	Q9BZM3	304 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	PODXL2	Q9NZ53	605 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	STIM2	Q9P246	746 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	MKL2	Q9ULH7	1088 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	UST	Q9Y2C2	406 aa		4.86	□□□□□ -1.63
VPS35-208	ENST00000568612	TNFRSF10B	O14763	440 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	OPLAH	O14841	1288 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	XYLB	O75191	536 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	SASH3	O75995	380 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	RARA	P10276	462 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	ZAP70	P43403	619 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	RANGAP1	P46060	587 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	AAMP	Q13685	434 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	ABTB2	Q8N961	1025 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	RETREG2	Q8NC44	543 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	GPR152	Q8TDT2	470 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	FAM13B	Q9NYF5	915 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	MTMR7	Q9Y216	660 aa		4.85	□□□□□ -1.63
VPS35-208	ENST00000568612	GDF11	O95390	407 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	TARS	P26639	723 aa	Known RBP	4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	GRN	P28799	593 aa	Known RBP	4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	RASSF7	Q02833	373 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	MTMR3	Q13615	1198 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	FAM26D	Q5JW98	314 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	B4GALNT3	Q6L9W6	998 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	PIK3R5	Q8WYR1	880 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	TNFRSF25	Q93038	417 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	ANO2	Q9NQ90	1003 aa		4.84	□□□□□ -1.63
VPS35-208	ENST00000568612	UBAP1L	F5GYI3	381 aa		4.83	□□□□□ -1.64
VPS35-208	ENST00000568612		M0R082	166 aa		4.83	□□□□□ -1.64
VPS35-208	ENST00000568612	PIK3R2	O00459	728 aa		4.83	□□□□□ -1.64
VPS35-208	ENST00000568612	ZBTB39	O15060	712 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 11 ms