RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DGKZQ13574 1117 aa18.25■□□□□ 0.51
CLN3-235ENST00000568497 NPM2Q86SE8 214 aaKnown RBP18.25■□□□□ 0.51
CLN3-235ENST00000568497 TRIM35Q9UPQ4 493 aa18.25■□□□□ 0.51
CLN3-235ENST00000568497 LTBP1Q14766 1721 aa18.25■□□□□ 0.51
CLN3-235ENST00000568497 CASP8AP2Q9UKL3 1982 aa18.24■□□□□ 0.51
CLN3-235ENST00000568497 FMR1Q06787 632 aaKnown RBP eCLIP18.24■□□□□ 0.51
CLN3-235ENST00000568497 ZNF790Q6PG37 636 aa18.24■□□□□ 0.51
CLN3-235ENST00000568497 C7orf43Q8WVR3 580 aa18.24■□□□□ 0.51
CLN3-235ENST00000568497 LAS1LQ9Y4W2 734 aaKnown RBP18.24■□□□□ 0.51
CLN3-235ENST00000568497 AOC2O75106 756 aa18.23■□□□□ 0.51
CLN3-235ENST00000568497 LMOD1P29536 600 aaPredicted RBP18.23■□□□□ 0.51
CLN3-235ENST00000568497 TTC5Q8N0Z6 440 aa18.23■□□□□ 0.51
CLN3-235ENST00000568497 GPC2Q8N158 579 aa18.22■□□□□ 0.51
CLN3-235ENST00000568497 GJA3Q9Y6H8 435 aa18.22■□□□□ 0.51
CLN3-235ENST00000568497 UBR2Q8IWV8 1755 aa18.22■□□□□ 0.51
CLN3-235ENST00000568497 CA12O43570 354 aa18.21■□□□□ 0.51
CLN3-235ENST00000568497 IARSP41252 1262 aaKnown RBP18.21■□□□□ 0.51
CLN3-235ENST00000568497 TAF7Q15545 349 aaPredicted RBP18.21■□□□□ 0.51
CLN3-235ENST00000568497 KRT24Q2M2I5 525 aa18.21■□□□□ 0.51
CLN3-235ENST00000568497 OLFM4Q6UX06 510 aa18.21■□□□□ 0.51
CLN3-235ENST00000568497 PNNQ9H307 717 aaKnown RBP18.21■□□□□ 0.51
CLN3-235ENST00000568497 MAP2K2P36507 400 aa18.2■□□□□ 0.5
CLN3-235ENST00000568497 IL6STP40189 918 aaPredicted RBP18.2■□□□□ 0.5
CLN3-235ENST00000568497 DIEXFQ68CQ4 756 aaKnown RBP18.2■□□□□ 0.5
CLN3-235ENST00000568497 RTKN2Q8IZC4 609 aa18.2■□□□□ 0.5
CLN3-235ENST00000568497 MIER1Q8N108 512 aa18.2■□□□□ 0.5
CLN3-235ENST00000568497 JDP2Q8WYK2 163 aa18.2■□□□□ 0.5
CLN3-235ENST00000568497 TRPM7Q96QT4 1865 aa18.2■□□□□ 0.5
CLN3-235ENST00000568497 TNRC18O15417 2968 aaPredicted RBP18.19■□□□□ 0.5
CLN3-235ENST00000568497 FZD9O00144 591 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 TRAF5O00463 557 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 HTATSF1O43719 755 aaKnown RBP18.19■□□□□ 0.5
CLN3-235ENST00000568497 A1BGP04217 495 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 NPR1P16066 1061 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 TEX13AQ9BXU3 409 aaPredicted RBP18.19■□□□□ 0.5
CLN3-235ENST00000568497 USP16Q9Y5T5 823 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 TLL2Q9Y6L7 1015 aa18.19■□□□□ 0.5
CLN3-235ENST00000568497 HEG1Q9ULI3 1381 aa18.18■□□□□ 0.5
CLN3-235ENST00000568497 EIF6P56537 245 aaKnown RBP18.18■□□□□ 0.5
CLN3-235ENST00000568497 SOX10P56693 466 aa18.18■□□□□ 0.5
CLN3-235ENST00000568497 NBPF5PQ86XG9 351 aaPredicted RBP18.18■□□□□ 0.5
CLN3-235ENST00000568497 CAMTA2O94983 1202 aa18.17■□□□□ 0.5
CLN3-235ENST00000568497 CST9Q5W186 159 aa18.17■□□□□ 0.5
CLN3-235ENST00000568497 SYNE4Q8N205 404 aa18.17■□□□□ 0.5
CLN3-235ENST00000568497 FMNL2Q96PY5 1086 aa18.17■□□□□ 0.5
CLN3-235ENST00000568497 TSPYL4Q9UJ04 414 aa18.17■□□□□ 0.5
CLN3-235ENST00000568497 NECTIN2Q92692 538 aa18.16■□□□□ 0.5
CLN3-235ENST00000568497 KDM3BQ7LBC6 1761 aa18.15■□□□□ 0.5
CLN3-235ENST00000568497 KLRG2A4D1S0 409 aaPredicted RBP18.15■□□□□ 0.5
CLN3-235ENST00000568497 EPS15P42566 896 aa18.15■□□□□ 0.5
CLN3-235ENST00000568497 BCORQ6W2J9 1755 aa18.14■□□□□ 0.5
CLN3-235ENST00000568497 BRPF1P55201 1214 aaPredicted RBP18.14■□□□□ 0.49
CLN3-235ENST00000568497 EIF4A1P60842 406 aaKnown RBP18.14■□□□□ 0.49
CLN3-235ENST00000568497 PRPF38BQ5VTL8 546 aaKnown RBP18.14■□□□□ 0.49
CLN3-235ENST00000568497 DZIP3Q86Y13 1208 aaKnown RBP18.14■□□□□ 0.49
CLN3-235ENST00000568497 CELF2O95319 508 aaKnown RBP18.13■□□□□ 0.49
CLN3-235ENST00000568497 SCNN1DP51172 638 aa18.13■□□□□ 0.49
CLN3-235ENST00000568497 CIAPIN1Q6FI81 312 aa18.13■□□□□ 0.49
CLN3-235ENST00000568497 USP50Q70EL3 339 aaPredicted RBP18.13■□□□□ 0.49
CLN3-235ENST00000568497 SAPCD2Q86UD0 394 aa18.13■□□□□ 0.49
CLN3-235ENST00000568497 NGEFQ8N5V2 710 aa18.13■□□□□ 0.49
CLN3-235ENST00000568497 FAM177BA6PVY3 158 aa18.12■□□□□ 0.49
CLN3-235ENST00000568497 ANXA1P04083 346 aa18.12■□□□□ 0.49
CLN3-235ENST00000568497 ZNF408Q9H9D4 720 aa18.12■□□□□ 0.49
CLN3-235ENST00000568497 NBPF26B4DH59 902 aa18.11■□□□□ 0.49
CLN3-235ENST00000568497 NBPF10Q6P3W6 841 aaKnown RBP18.11■□□□□ 0.49
CLN3-235ENST00000568497 CLEC4GQ6UXB4 293 aa18.11■□□□□ 0.49
CLN3-235ENST00000568497 NBPF15Q8N660 670 aa18.11■□□□□ 0.49
CLN3-235ENST00000568497 SNRPA1P09661 255 aaKnown RBP18.1■□□□□ 0.49
CLN3-235ENST00000568497 EIF2S2P20042 333 aaKnown RBP18.1■□□□□ 0.49
CLN3-235ENST00000568497 ALDH1B1P30837 517 aa18.1■□□□□ 0.49
CLN3-235ENST00000568497 LMOD3Q0VAK6 560 aa18.1■□□□□ 0.49
CLN3-235ENST00000568497 LARGE2Q8N3Y3 721 aa18.1■□□□□ 0.49
CLN3-235ENST00000568497 PSMD1Q99460 953 aa18.1■□□□□ 0.49
CLN3-235ENST00000568497 ZNF652Q9Y2D9 606 aa18.1■□□□□ 0.49
CLN3-235ENST00000568497 ELL2O00472 640 aaPredicted RBP18.09■□□□□ 0.49
CLN3-235ENST00000568497 TPTE2Q6XPS3 522 aa18.09■□□□□ 0.49
CLN3-235ENST00000568497 TSR2Q969E8 191 aaKnown RBP18.09■□□□□ 0.49
CLN3-235ENST00000568497 MBIPQ9NS73 344 aa18.09■□□□□ 0.49
CLN3-235ENST00000568497 COL4A5P29400 1685 aa18.09■□□□□ 0.49
CLN3-235ENST00000568497 SNED1Q8TER0 1413 aa18.08■□□□□ 0.49
CLN3-235ENST00000568497 CHL1O00533 1208 aa18.08■□□□□ 0.48
CLN3-235ENST00000568497 GTF2E1P29083 439 aaPredicted RBP18.08■□□□□ 0.48
CLN3-235ENST00000568497 PROSER3Q2NL68 480 aa18.08■□□□□ 0.48
CLN3-235ENST00000568497 MYL6BP14649 208 aa18.07■□□□□ 0.48
CLN3-235ENST00000568497 WWC1Q8IX03 1113 aa18.07■□□□□ 0.48
CLN3-235ENST00000568497 HHIPL1Q96JK4 782 aa18.07■□□□□ 0.48
CLN3-235ENST00000568497 GLIS2Q9BZE0 524 aaPredicted RBP18.07■□□□□ 0.48
CLN3-235ENST00000568497 SPINK5Q9NQ38 1064 aaPredicted RBP18.07■□□□□ 0.48
CLN3-235ENST00000568497 NIP7Q9Y221 180 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-235ENST00000568497 TCERG1O14776 1098 aaKnown RBP18.06■□□□□ 0.48
CLN3-235ENST00000568497 RGL2O15211 777 aa18.06■□□□□ 0.48
CLN3-235ENST00000568497 NOGQ13253 232 aa18.06■□□□□ 0.48
CLN3-235ENST00000568497 CC2D2BQ6DHV5 1058 aa18.06■□□□□ 0.48
CLN3-235ENST00000568497 ZNF428Q96B54 188 aa18.06■□□□□ 0.48
CLN3-235ENST00000568497 ADARB2Q9NS39 739 aaKnown RBP18.06■□□□□ 0.48
CLN3-235ENST00000568497 NIM1KQ8IY84 436 aa18.05■□□□□ 0.48
CLN3-235ENST00000568497 ZNF853P0CG23 659 aa18.04■□□□□ 0.48
CLN3-235ENST00000568497 ZIC5Q96T25 663 aa18.04■□□□□ 0.48
CLN3-235ENST00000568497 GRIPAP1Q4V328 841 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms