RNA–Protein interactions for RNA: ENST00000568290.1

ATXN3-250, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-250ENST00000568290 LRRFIP1Q32MZ4 808 aaKnown RBP9.15□□□□□ -0.94
ATXN3-250ENST00000568290 CCDC183Q5T5S1 534 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 VPS53Q5VIR6 699 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 PPP1R42Q7Z4L9 355 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 PANK2Q9BZ23 570 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 USP44Q9H0E7 712 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 ECHDC1Q9NTX5 307 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 HMG20BQ9P0W2 317 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 CYP46A1Q9Y6A2 500 aa9.15□□□□□ -0.94
ATXN3-250ENST00000568290 PEAK1Q9H792 1746 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 BTBD11A6QL63 1104 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 F6X3S4 739 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 ZNF500O60304 480 aaPredicted RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 OFD1O75665 1012 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 KCNJ4P48050 445 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 EIF4A1P60842 406 aaKnown RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 HMGN5P82970 282 aaKnown RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 HSP90AA2PQ14568 343 aaPredicted RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 C14orf37Q86TY3 774 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 PDLIM2Q96JY6 352 aa9.14□□□□□ -0.95
ATXN3-250ENST00000568290 ARIH1Q9Y4X5 557 aaPredicted RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 XRN1Q8IZH2 1706 aaKnown RBP9.14□□□□□ -0.95
ATXN3-250ENST00000568290 NUTM2FA1L443 756 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 DHX8Q14562 1220 aaKnown RBP9.13□□□□□ -0.95
ATXN3-250ENST00000568290 ZNF530Q6P9A1 599 aaPredicted RBP9.13□□□□□ -0.95
ATXN3-250ENST00000568290 LARP1Q6PKG0 1096 aaKnown RBP9.13□□□□□ -0.95
ATXN3-250ENST00000568290 KSR2Q6VAB6 950 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 G2E3Q7L622 706 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 PLPP6Q8IY26 295 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 SLAIN1Q8ND83 568 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 IL17REQ8NFR9 667 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 LINS1Q8NG48 757 aa9.13□□□□□ -0.95
ATXN3-250ENST00000568290 ALDH8A1Q9H2A2 487 aaPredicted RBP9.13□□□□□ -0.95
ATXN3-250ENST00000568290 FAM208AQ9UK61 1670 aaKnown RBP9.13□□□□□ -0.95
ATXN3-250ENST00000568290 RFX7Q2KHR2 1363 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 ZSCAN22P10073 491 aaPredicted RBP9.12□□□□□ -0.95
ATXN3-250ENST00000568290 CHAF1AQ13111 956 aaPredicted RBP9.12□□□□□ -0.95
ATXN3-250ENST00000568290 KRT24Q2M2I5 525 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 BEND3Q5T5X7 828 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 KCNV2Q8TDN2 545 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 OTUD7AQ8TE49 926 aaPredicted RBP9.12□□□□□ -0.95
ATXN3-250ENST00000568290 ANO8Q9HCE9 1232 aaPredicted RBP9.12□□□□□ -0.95
ATXN3-250ENST00000568290 MIS18AQ9NYP9 233 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 ZKSCAN5Q9Y2L8 839 aa9.12□□□□□ -0.95
ATXN3-250ENST00000568290 CCDC171Q6TFL3 1326 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 KIF13AQ9H1H9 1805 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 PNMA6EA0A0J9YXQ4 647 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 GOLGA6L4A6NEF3 574 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 FOXO3O43524 673 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 STX6O43752 255 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 SLC34A2O95436 690 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 HMGB1P09429 215 aaKnown RBP9.11□□□□□ -0.95
ATXN3-250ENST00000568290 HOXB3P14651 431 aaPredicted RBP9.11□□□□□ -0.95
ATXN3-250ENST00000568290 GAS2L3Q86XJ1 694 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 SCAND2PQ9GZW5 306 aaPredicted RBP9.11□□□□□ -0.95
ATXN3-250ENST00000568290 EMILIN3Q9NT22 766 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 PDRG1Q9NUG6 133 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 SPG7Q9UQ90 795 aa9.11□□□□□ -0.95
ATXN3-250ENST00000568290 CEP170BQ9Y4F5 1589 aaPredicted RBP9.11□□□□□ -0.95
ATXN3-250ENST00000568290 PIK3C2AO00443 1686 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 PHRF1Q9P1Y6 1649 aaKnown RBP9.1□□□□□ -0.95
ATXN3-250ENST00000568290 PI4KAP2A4QPH2 592 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 EIF2S2P20042 333 aaKnown RBP9.1□□□□□ -0.95
ATXN3-250ENST00000568290 KRT85P78386 507 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 E2F4Q16254 413 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 ATL3Q6DD88 541 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 ZGPATQ8N5A5 531 aaKnown RBP9.1□□□□□ -0.95
ATXN3-250ENST00000568290 PI4KAP1Q8N8J0 262 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 PDCL3Q9H2J4 239 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 DDX21Q9NR30 783 aaKnown RBP eCLIP9.1□□□□□ -0.95
ATXN3-250ENST00000568290 USP25Q9UHP3 1055 aa9.1□□□□□ -0.95
ATXN3-250ENST00000568290 UTYO14607 1347 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 MED1Q15648 1581 aaPredicted RBP9.09□□□□□ -0.95
ATXN3-250ENST00000568290 SYCE3A1L190 88 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 RNMTO43148 476 aaKnown RBP9.09□□□□□ -0.95
ATXN3-250ENST00000568290 F13A1P00488 732 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 CCDC192P0DO97 292 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 KCNA6P17658 529 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 PRIM1P49642 420 aaKnown RBP9.09□□□□□ -0.95
ATXN3-250ENST00000568290 PI4K2BQ8TCG2 481 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 RAPGEF4Q8WZA2 1011 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 KCNB2Q92953 911 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 LTV1Q96GA3 475 aaPredicted RBP9.09□□□□□ -0.95
ATXN3-250ENST00000568290 PRIMPOLQ96LW4 560 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 WDR70Q9NW82 654 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 SNX14Q9Y5W7 946 aa9.09□□□□□ -0.95
ATXN3-250ENST00000568290 ELP1O95163 1332 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 ERBB4Q15303 1308 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 GRM8O00222 908 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 DYNC1I1O14576 645 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 CASTP20810 708 aaKnown RBP9.08□□□□□ -0.96
ATXN3-250ENST00000568290 BLOC1S2Q6QNY1 142 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 RUFY3Q7L099 469 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 GPT2Q8TD30 523 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 OXER1Q8TDS5 423 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 PTCD2Q8WV60 388 aaKnown RBP9.08□□□□□ -0.96
ATXN3-250ENST00000568290 LSG1Q9H089 658 aaKnown RBP9.08□□□□□ -0.96
ATXN3-250ENST00000568290 ZSCAN16Q9H4T2 348 aaPredicted RBP9.08□□□□□ -0.96
ATXN3-250ENST00000568290 ZSWIM6Q9HCJ5 1215 aa9.08□□□□□ -0.96
ATXN3-250ENST00000568290 IL1RAPL2Q9NP60 686 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms