RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 C7orf43Q8WVR3 580 aa24.15■■□□□ 1.46
CLN3-227ENST00000567495 TAOK3Q9H2K8 898 aa24.15■■□□□ 1.46
CLN3-227ENST00000567495 GOLGA2Q08379 1002 aa24.14■■□□□ 1.45
CLN3-227ENST00000567495 RPGRQ92834 1020 aaKnown RBP24.14■■□□□ 1.45
CLN3-227ENST00000567495 NLRP3Q96P20 1036 aa24.14■■□□□ 1.45
CLN3-227ENST00000567495 ZNF219Q9P2Y4 722 aaPredicted RBP24.14■■□□□ 1.45
CLN3-227ENST00000567495 NUP98P52948 1817 aa24.14■■□□□ 1.45
CLN3-227ENST00000567495 KDM2BQ8NHM5 1336 aa24.13■■□□□ 1.45
CLN3-227ENST00000567495 CCDC93Q567U6 631 aa24.13■■□□□ 1.45
CLN3-227ENST00000567495 TSR2Q969E8 191 aaKnown RBP24.13■■□□□ 1.45
CLN3-227ENST00000567495 TRIM28Q13263 835 aaKnown RBP24.12■■□□□ 1.45
CLN3-227ENST00000567495 CC2D2BQ6DHV5 1058 aa24.12■■□□□ 1.45
CLN3-227ENST00000567495 RTKN2Q8IZC4 609 aa24.12■■□□□ 1.45
CLN3-227ENST00000567495 RBM17Q96I25 401 aaKnown RBP24.12■■□□□ 1.45
CLN3-227ENST00000567495 CRAMP1Q96RY5 1269 aa24.12■■□□□ 1.45
CLN3-227ENST00000567495 COL11A2P13942 1736 aaPredicted RBP24.12■■□□□ 1.45
CLN3-227ENST00000567495 TRMT112Q9UI30 125 aaKnown RBP24.11■■□□□ 1.45
CLN3-227ENST00000567495 SH3TC1Q8TE82 1336 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 SENP3-EIF4A1A0A087X0R7 540 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 DDX58O95786 925 aaKnown RBP24.1■■□□□ 1.45
CLN3-227ENST00000567495 GRIPAP1Q4V328 841 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 RIC3Q7Z5B4 369 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 TSPYL6Q8N831 410 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 ISCA1Q9BUE6 129 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 STK31Q9BXU1 1019 aa24.1■■□□□ 1.45
CLN3-227ENST00000567495 PRELPP51888 382 aa24.09■■□□□ 1.45
CLN3-227ENST00000567495 TWISTNBQ3B726 338 aaPredicted RBP24.09■■□□□ 1.45
CLN3-227ENST00000567495 SALL2Q9Y467 1007 aaPredicted RBP24.09■■□□□ 1.45
CLN3-227ENST00000567495 KIF3CO14782 793 aa24.08■■□□□ 1.45
CLN3-227ENST00000567495 PHAXQ9H814 394 aaKnown RBP24.07■■□□□ 1.44
CLN3-227ENST00000567495 FKBP4Q02790 459 aaKnown RBP eCLIP24.06■■□□□ 1.44
CLN3-227ENST00000567495 DPY19L2Q6NUT2 758 aa24.06■■□□□ 1.44
CLN3-227ENST00000567495 MYH16Q9H6N6 1097 aa24.06■■□□□ 1.44
CLN3-227ENST00000567495 FANCIQ9NVI1 1328 aa24.06■■□□□ 1.44
CLN3-227ENST00000567495 SLX4Q8IY92 1834 aa24.05■■□□□ 1.44
CLN3-227ENST00000567495 GLTPD2A6NH11 291 aa24.05■■□□□ 1.44
CLN3-227ENST00000567495 ATP5J2-PTCD1G3V325 749 aa24.05■■□□□ 1.44
CLN3-227ENST00000567495 HSP90B1P14625 803 aaKnown RBP24.05■■□□□ 1.44
CLN3-227ENST00000567495 TMX4Q9H1E5 349 aaPredicted RBP24.05■■□□□ 1.44
CLN3-227ENST00000567495 NMRK2Q9NPI5 230 aa24.05■■□□□ 1.44
CLN3-227ENST00000567495 HCLS1P14317 486 aaPredicted RBP24.04■■□□□ 1.44
CLN3-227ENST00000567495 C3orf67Q6ZVT6 689 aa24.04■■□□□ 1.44
CLN3-227ENST00000567495 PSMD1Q99460 953 aa24.03■■□□□ 1.44
CLN3-227ENST00000567495 BBOX1O75936 387 aa24.02■■□□□ 1.44
CLN3-227ENST00000567495 TOMM70O94826 608 aa24.02■■□□□ 1.44
CLN3-227ENST00000567495 DDX46Q7L014 1031 aaKnown RBP24.02■■□□□ 1.44
CLN3-227ENST00000567495 CCDC191Q8NCU4 936 aa24.02■■□□□ 1.44
CLN3-227ENST00000567495 METTL22Q9BUU2 404 aaPredicted RBP24.02■■□□□ 1.44
CLN3-227ENST00000567495 SBF1O95248 1867 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 CCER2I3L3R5 266 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 PPEF1O14829 653 aaPredicted RBP24.01■■□□□ 1.43
CLN3-227ENST00000567495 SLC4A2P04920 1241 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 KSR2Q6VAB6 950 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 C16orf71Q8IYS4 520 aaPredicted RBP24.01■■□□□ 1.43
CLN3-227ENST00000567495 SYNE4Q8N205 404 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 FAM89AQ96GI7 184 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 TNRC6CQ9HCJ0 1690 aaKnown RBP24.01■■□□□ 1.43
CLN3-227ENST00000567495 ARFGEF2Q9Y6D5 1785 aa24.01■■□□□ 1.43
CLN3-227ENST00000567495 OLFM4Q6UX06 510 aa24■■□□□ 1.43
CLN3-227ENST00000567495 ZBTB38Q8NAP3 1195 aaPredicted RBP24■■□□□ 1.43
CLN3-227ENST00000567495 ATP6V0A2Q9Y487 856 aa24■■□□□ 1.43
CLN3-227ENST00000567495 FER1L6Q2WGJ9 1857 aa23.99■■□□□ 1.43
CLN3-227ENST00000567495 VEGFAP15692 232 aaPredicted RBP23.99■■□□□ 1.43
CLN3-227ENST00000567495 TMC4Q7Z404 712 aa23.99■■□□□ 1.43
CLN3-227ENST00000567495 MYD88Q99836 296 aa23.99■■□□□ 1.43
CLN3-227ENST00000567495 RRAGCQ9HB90 399 aa23.99■■□□□ 1.43
CLN3-227ENST00000567495 ZNF277Q9NRM2 450 aaPredicted RBP23.99■■□□□ 1.43
CLN3-227ENST00000567495 CWC25Q9NXE8 425 aaPredicted RBP23.99■■□□□ 1.43
CLN3-227ENST00000567495 IRS4O14654 1257 aaPredicted RBP23.98■■□□□ 1.43
CLN3-227ENST00000567495 VAMP4O75379 141 aa23.98■■□□□ 1.43
CLN3-227ENST00000567495 EXOSC9Q06265 439 aaKnown RBP23.98■■□□□ 1.43
CLN3-227ENST00000567495 NEXNQ0ZGT2 675 aa23.98■■□□□ 1.43
CLN3-227ENST00000567495 SF3B3Q15393 1217 aaKnown RBP23.98■■□□□ 1.43
CLN3-227ENST00000567495 MAP3K2Q9Y2U5 619 aa23.98■■□□□ 1.43
CLN3-227ENST00000567495 ABCC4O15439 1325 aa23.98■■□□□ 1.43
CLN3-227ENST00000567495 ANKRD36CQ5JPF3 1778 aa23.98■■□□□ 1.43
CLN3-227ENST00000567495 PI4KAP2A4QPH2 592 aa23.97■■□□□ 1.43
CLN3-227ENST00000567495 IARSP41252 1262 aaKnown RBP23.97■■□□□ 1.43
CLN3-227ENST00000567495 GRAPQ13588 217 aa23.97■■□□□ 1.43
CLN3-227ENST00000567495 PI4KAP1Q8N8J0 262 aa23.97■■□□□ 1.43
CLN3-227ENST00000567495 RBM46Q8TBY0 533 aaKnown RBP23.97■■□□□ 1.43
CLN3-227ENST00000567495 GRAPLQ8TC17 118 aaPredicted RBP23.97■■□□□ 1.43
CLN3-227ENST00000567495 ZNF521Q96K83 1311 aa23.96■■□□□ 1.43
CLN3-227ENST00000567495 TCERG1O14776 1098 aaKnown RBP23.96■■□□□ 1.43
CLN3-227ENST00000567495 PCCAP05165 728 aaPredicted RBP23.96■■□□□ 1.43
CLN3-227ENST00000567495 SP8Q8IXZ3 490 aa23.96■■□□□ 1.43
CLN3-227ENST00000567495 SNED1Q8TER0 1413 aa23.95■■□□□ 1.42
CLN3-227ENST00000567495 JDP2Q8WYK2 163 aa23.95■■□□□ 1.42
CLN3-227ENST00000567495 VPS33BQ9H267 617 aa23.95■■□□□ 1.42
CLN3-227ENST00000567495 SPINK5Q9NQ38 1064 aaPredicted RBP23.95■■□□□ 1.42
CLN3-227ENST00000567495 FLIIQ13045 1269 aa23.94■■□□□ 1.42
CLN3-227ENST00000567495 SUPT20HQ8NEM7 779 aa23.93■■□□□ 1.42
CLN3-227ENST00000567495 ZNF428Q96B54 188 aa23.93■■□□□ 1.42
CLN3-227ENST00000567495 HSPA6P17066 643 aa23.92■■□□□ 1.42
CLN3-227ENST00000567495 FSTL1Q12841 308 aa23.92■■□□□ 1.42
CLN3-227ENST00000567495 RTL5Q5HYW3 569 aaPredicted RBP23.92■■□□□ 1.42
CLN3-227ENST00000567495 G2E3Q7L622 706 aa23.92■■□□□ 1.42
CLN3-227ENST00000567495 FKBP5Q13451 457 aaPredicted RBP23.91■■□□□ 1.42
CLN3-227ENST00000567495 RTFDC1Q9BY42 306 aaPredicted RBP23.91■■□□□ 1.42
CLN3-227ENST00000567495 E9PSI1 815 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms