RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ZNF496Q96IT1 587 aaPredicted RBP15.01□□□□□ -0.01
CLN3-226ENST00000567160 TEFQ10587 303 aa15□□□□□ -0.01
CLN3-226ENST00000567160 CCDC184Q52MB2 194 aa15□□□□□ -0.01
CLN3-226ENST00000567160 CC2D2BQ6DHV5 1058 aa15□□□□□ -0.01
CLN3-226ENST00000567160 OLFM4Q6UX06 510 aa15□□□□□ -0.01
CLN3-226ENST00000567160 CFAP53Q96M91 514 aa15□□□□□ -0.01
CLN3-226ENST00000567160 FMNL2Q96PY5 1086 aa15□□□□□ -0.01
CLN3-226ENST00000567160 COL3A1P02461 1466 aaPredicted RBP15□□□□□ -0.01
CLN3-226ENST00000567160 CELF2O95319 508 aaKnown RBP14.99□□□□□ -0.01
CLN3-226ENST00000567160 A1BGP04217 495 aa14.99□□□□□ -0.01
CLN3-226ENST00000567160 EPS15P42566 896 aa14.99□□□□□ -0.01
CLN3-226ENST00000567160 SCNN1DP51172 638 aa14.99□□□□□ -0.01
CLN3-226ENST00000567160 MTHFSDQ2M296 383 aaKnown RBP14.99□□□□□ -0.01
CLN3-226ENST00000567160 GRIPAP1Q4V328 841 aa14.99□□□□□ -0.01
CLN3-226ENST00000567160 HMOX1P09601 288 aa14.98□□□□□ -0.01
CLN3-226ENST00000567160 MRS2Q9HD23 443 aa14.98□□□□□ -0.01
CLN3-226ENST00000567160 NOGQ13253 232 aa14.97□□□□□ -0.01
CLN3-226ENST00000567160 CIAPIN1Q6FI81 312 aa14.97□□□□□ -0.01
CLN3-226ENST00000567160 LARGE2Q8N3Y3 721 aa14.97□□□□□ -0.01
CLN3-226ENST00000567160 ADARB2Q9NS39 739 aaKnown RBP14.97□□□□□ -0.01
CLN3-226ENST00000567160 RGL2O15211 777 aa14.96□□□□□ -0.01
CLN3-226ENST00000567160 GTF2E1P29083 439 aaPredicted RBP14.96□□□□□ -0.01
CLN3-226ENST00000567160 SOX10P56693 466 aa14.96□□□□□ -0.01
CLN3-226ENST00000567160 NIP7Q9Y221 180 aaKnown RBP eCLIP14.96□□□□□ -0.01
CLN3-226ENST00000567160 SIPA1L3O60292 1781 aaPredicted RBP14.96□□□□□ -0.02
CLN3-226ENST00000567160 SNED1Q8TER0 1413 aa14.95□□□□□ -0.02
CLN3-226ENST00000567160 CCER2I3L3R5 266 aa14.95□□□□□ -0.02
CLN3-226ENST00000567160 DIAPH1O60610 1272 aaKnown RBP14.95□□□□□ -0.02
CLN3-226ENST00000567160 NIM1KQ8IY84 436 aa14.95□□□□□ -0.02
CLN3-226ENST00000567160 ZNF408Q9H9D4 720 aa14.94□□□□□ -0.02
CLN3-226ENST00000567160 SAGE1Q9NXZ1 904 aa14.94□□□□□ -0.02
CLN3-226ENST00000567160 GPRC5DQ9NZD1 345 aa14.94□□□□□ -0.02
CLN3-226ENST00000567160 COL4A5P29400 1685 aa14.93□□□□□ -0.02
CLN3-226ENST00000567160 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
CLN3-226ENST00000567160 U2SURPO15042 1029 aaKnown RBP14.93□□□□□ -0.02
CLN3-226ENST00000567160 FAM177BA6PVY3 158 aa14.92□□□□□ -0.02
CLN3-226ENST00000567160 GAS2L2Q8NHY3 880 aa14.92□□□□□ -0.02
CLN3-226ENST00000567160 ZC3H15Q8WU90 426 aaKnown RBP14.92□□□□□ -0.02
CLN3-226ENST00000567160 GCC1Q96CN9 775 aa14.92□□□□□ -0.02
CLN3-226ENST00000567160 NYXQ9GZU5 481 aa14.92□□□□□ -0.02
CLN3-226ENST00000567160 TMX4Q9H1E5 349 aaPredicted RBP14.92□□□□□ -0.02
CLN3-226ENST00000567160 CRY2Q49AN0 593 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 CDC37L1Q7L3B6 337 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 IL17REQ8NFR9 667 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
CLN3-226ENST00000567160 GLIS2Q9BZE0 524 aaPredicted RBP14.91□□□□□ -0.02
CLN3-226ENST00000567160 NUDCQ9Y266 331 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 AKAP11Q9UKA4 1901 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 CDHR2Q9BYE9 1310 aa14.91□□□□□ -0.02
CLN3-226ENST00000567160 BTBD11A6QL63 1104 aa14.9□□□□□ -0.02
CLN3-226ENST00000567160 PPIP5K2O43314 1243 aa14.9□□□□□ -0.02
CLN3-226ENST00000567160 WDR43Q15061 677 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLN3-226ENST00000567160 NBPF15Q8N660 670 aa14.9□□□□□ -0.02
CLN3-226ENST00000567160 VPS33BQ9H267 617 aa14.9□□□□□ -0.02
CLN3-226ENST00000567160 PGAP2Q9UHJ9 254 aa14.9□□□□□ -0.02
CLN3-226ENST00000567160 U2AF1L5P0DN76 240 aaPredicted RBP14.89□□□□□ -0.03
CLN3-226ENST00000567160 PIP4K2AP48426 406 aaPredicted RBP14.89□□□□□ -0.03
CLN3-226ENST00000567160 HUNKP57058 714 aa14.89□□□□□ -0.03
CLN3-226ENST00000567160 U2AF1Q01081 240 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLN3-226ENST00000567160 USP16Q9Y5T5 823 aa14.89□□□□□ -0.03
CLN3-226ENST00000567160 CTU1Q7Z7A3 348 aaKnown RBP14.88□□□□□ -0.03
CLN3-226ENST00000567160 FAM9BQ8IZU0 186 aa14.88□□□□□ -0.03
CLN3-226ENST00000567160 RBM17Q96I25 401 aaKnown RBP14.88□□□□□ -0.03
CLN3-226ENST00000567160 PPEF1O14829 653 aaPredicted RBP14.87□□□□□ -0.03
CLN3-226ENST00000567160 SNRPA1P09661 255 aaKnown RBP14.87□□□□□ -0.03
CLN3-226ENST00000567160 HOXA10P31260 410 aaPredicted RBP14.87□□□□□ -0.03
CLN3-226ENST00000567160 GMPSP49915 693 aaPredicted RBP14.87□□□□□ -0.03
CLN3-226ENST00000567160 SUPT20HQ8NEM7 779 aa14.87□□□□□ -0.03
CLN3-226ENST00000567160 PNISRQ8TF01 805 aaKnown RBP14.87□□□□□ -0.03
CLN3-226ENST00000567160 CCDC102AQ96A19 550 aa14.87□□□□□ -0.03
CLN3-226ENST00000567160 BCL2L13Q9BXK5 485 aa14.87□□□□□ -0.03
CLN3-226ENST00000567160 ZNRF3Q9ULT6 936 aa14.87□□□□□ -0.03
CLN3-226ENST00000567160 DLG5Q8TDM6 1919 aa14.87□□□□□ -0.03
CLN3-226ENST00000567160 CEMIPQ8WUJ3 1361 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 RIC1Q4ADV7 1423 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 AOC3Q16853 763 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 RGMBQ6NW40 437 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 CRAMP1Q96RY5 1269 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 ZIC5Q96T25 663 aa14.86□□□□□ -0.03
CLN3-226ENST00000567160 ABCC12Q96J65 1359 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 TRPA1O75762 1119 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 CXCL9Q07325 125 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 TNIP1Q15025 636 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 NUTM1Q86Y26 1132 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 ADAMTS8Q9UP79 889 aa14.85□□□□□ -0.03
CLN3-226ENST00000567160 TCERG1O14776 1098 aaKnown RBP14.84□□□□□ -0.03
CLN3-226ENST00000567160 KCNQ3O43525 872 aa14.84□□□□□ -0.03
CLN3-226ENST00000567160 PKN2Q16513 984 aaKnown RBP14.84□□□□□ -0.03
CLN3-226ENST00000567160 C2orf69Q8N8R5 385 aa14.84□□□□□ -0.03
CLN3-226ENST00000567160 RNF186Q9NXI6 227 aa14.84□□□□□ -0.03
CLN3-226ENST00000567160 IBTKQ9P2D0 1353 aaPredicted RBP14.84□□□□□ -0.03
CLN3-226ENST00000567160 NUP98P52948 1817 aa14.83□□□□□ -0.04
CLN3-226ENST00000567160 FAM155AB1AL88 458 aaPredicted RBP14.83□□□□□ -0.04
CLN3-226ENST00000567160 H7C1D1 291 aa14.83□□□□□ -0.04
CLN3-226ENST00000567160 ZNF157P51786 506 aaPredicted RBP14.83□□□□□ -0.04
CLN3-226ENST00000567160 KIF23Q02241 960 aaPredicted RBP14.83□□□□□ -0.04
CLN3-226ENST00000567160 HLFQ16534 295 aa14.83□□□□□ -0.04
CLN3-226ENST00000567160 REM2Q8IYK8 340 aaPredicted RBP14.83□□□□□ -0.04
CLN3-226ENST00000567160 HPS5Q9UPZ3 1129 aa14.83□□□□□ -0.04
CLN3-226ENST00000567160 PRAMEF22A3QJZ6 481 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms