RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 THSD7BQ9C0I4 1608 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 LTBP1Q14766 1721 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 TCERG1O14776 1098 aaKnown RBP9.83□□□□□ -0.84
VPS4A-203ENST00000564399 CA12O43570 354 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 CELF2O95319 508 aaKnown RBP9.83□□□□□ -0.84
VPS4A-203ENST00000564399 SCNN1DP51172 638 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 DGKZQ13574 1117 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 NIM1KQ8IY84 436 aa9.83□□□□□ -0.84
VPS4A-203ENST00000564399 RPGRQ92834 1020 aaKnown RBP9.83□□□□□ -0.84
VPS4A-203ENST00000564399 HLFQ16534 295 aa9.82□□□□□ -0.84
VPS4A-203ENST00000564399 NUTM1Q86Y26 1132 aa9.82□□□□□ -0.84
VPS4A-203ENST00000564399 NYXQ9GZU5 481 aa9.82□□□□□ -0.84
VPS4A-203ENST00000564399 ZNF408Q9H9D4 720 aa9.82□□□□□ -0.84
VPS4A-203ENST00000564399 COL4A5P29400 1685 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 CEMIPQ8WUJ3 1361 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 NBPF26B4DH59 902 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 RGL2O15211 777 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 GRIPAP1Q4V328 841 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 NBPF10Q6P3W6 841 aaKnown RBP9.81□□□□□ -0.84
VPS4A-203ENST00000564399 SAPCD2Q86UD0 394 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 NGEFQ8N5V2 710 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 NBPF15Q8N660 670 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 RTF1Q92541 710 aaKnown RBP9.81□□□□□ -0.84
VPS4A-203ENST00000564399 TMX4Q9H1E5 349 aaPredicted RBP9.81□□□□□ -0.84
VPS4A-203ENST00000564399 ADARB2Q9NS39 739 aaKnown RBP9.81□□□□□ -0.84
VPS4A-203ENST00000564399 NUP98P52948 1817 aa9.81□□□□□ -0.84
VPS4A-203ENST00000564399 PPIP5K2O43314 1243 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 PRKAR2BP31323 418 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 BRPF1P55201 1214 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-203ENST00000564399 CRY2Q49AN0 593 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 CIAPIN1Q6FI81 312 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 RBM17Q96I25 401 aaKnown RBP9.8□□□□□ -0.84
VPS4A-203ENST00000564399 PHACTR3Q96KR7 559 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 GLIS2Q9BZE0 524 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-203ENST00000564399 GPRC5DQ9NZD1 345 aa9.8□□□□□ -0.84
VPS4A-203ENST00000564399 POLR2AP24928 1970 aaKnown RBP9.79□□□□□ -0.84
VPS4A-203ENST00000564399 ABCC12Q96J65 1359 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 PPEF1O14829 653 aaPredicted RBP9.79□□□□□ -0.84
VPS4A-203ENST00000564399 AOC3Q16853 763 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 MCM10Q7L590 875 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 HHIPL1Q96JK4 782 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 PCGF6Q9BYE7 350 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 SNED1Q8TER0 1413 aa9.79□□□□□ -0.84
VPS4A-203ENST00000564399 GPTP24298 496 aa9.78□□□□□ -0.84
VPS4A-203ENST00000564399 HOXA10P31260 410 aaPredicted RBP9.78□□□□□ -0.84
VPS4A-203ENST00000564399 GMPSP49915 693 aaPredicted RBP9.78□□□□□ -0.84
VPS4A-203ENST00000564399 CXCL9Q07325 125 aa9.78□□□□□ -0.84
VPS4A-203ENST00000564399 CRAMP1Q96RY5 1269 aa9.78□□□□□ -0.84
VPS4A-203ENST00000564399 BCL2L13Q9BXK5 485 aa9.78□□□□□ -0.84
VPS4A-203ENST00000564399 ZNRF3Q9ULT6 936 aa9.78□□□□□ -0.84
VPS4A-203ENST00000564399 NPC1L1Q9UHC9 1359 aa9.77□□□□□ -0.84
VPS4A-203ENST00000564399 ERVV-1B6SEH8 477 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 SOX10P56693 466 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 TRIM26Q12899 539 aaPredicted RBP9.77□□□□□ -0.85
VPS4A-203ENST00000564399 NOGQ13253 232 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 DCTN1Q14203 1278 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 KIF6Q6ZMV9 814 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 CDC37L1Q7L3B6 337 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 SLC51AQ86UW1 340 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 POTEDQ86YR6 584 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 RRP7AQ9Y3A4 280 aaKnown RBP9.77□□□□□ -0.85
VPS4A-203ENST00000564399 AKAP11Q9UKA4 1901 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 COL3A1P02461 1466 aaPredicted RBP9.77□□□□□ -0.85
VPS4A-203ENST00000564399 KIF7Q2M1P5 1343 aa9.77□□□□□ -0.85
VPS4A-203ENST00000564399 PER1O15534 1290 aaPredicted RBP9.76□□□□□ -0.85
VPS4A-203ENST00000564399 HUNKP57058 714 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 SUSD4Q5VX71 490 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 SUPT20HQ8NEM7 779 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 ZC3H15Q8WU90 426 aaKnown RBP9.76□□□□□ -0.85
VPS4A-203ENST00000564399 CFAP53Q96M91 514 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 ZIC5Q96T25 663 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 RSPH6AQ9H0K4 717 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 VPS33BQ9H267 617 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 ZBTB3Q9H5J0 574 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 MIS18AQ9NYP9 233 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 NUDCQ9Y266 331 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 MAP3K15Q6ZN16 1313 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 CLSPNQ9HAW4 1339 aa9.76□□□□□ -0.85
VPS4A-203ENST00000564399 TNRC18O15417 2968 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-203ENST00000564399 RAD17O75943 681 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 U2AF1L5P0DN76 240 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-203ENST00000564399 MYL6BP14649 208 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 U2AF1Q01081 240 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS4A-203ENST00000564399 TNIP1Q15025 636 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 TAF7Q15545 349 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-203ENST00000564399 TTLL7Q6ZT98 887 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 USP48Q86UV5 1035 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 NLRP3Q96P20 1036 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 PGAP2Q9UHJ9 254 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 ATP6V0A2Q9Y487 856 aa9.75□□□□□ -0.85
VPS4A-203ENST00000564399 RIC1Q4ADV7 1423 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 LAMB4A4D0S4 1761 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 H7C1D1 291 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 HIRAP54198 1017 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-203ENST00000564399 DPP8Q6V1X1 898 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-203ENST00000564399 C3orf67Q6ZVT6 689 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 PPP1R42Q7Z4L9 355 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 TRPM4Q8TD43 1214 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 CNOT7Q9UIV1 285 aaKnown RBP9.74□□□□□ -0.85
VPS4A-203ENST00000564399 UBN2Q6ZU65 1347 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 212.9 ms