RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ZNF589Q86UQ0 364 aaPredicted RBP16.18■□□□□ 0.18
CLK3-215ENST00000564353 ARID3AQ99856 593 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 R3HCC1Q9Y3T6 440 aaKnown RBP16.18■□□□□ 0.18
CLK3-215ENST00000564353 HOXB7P09629 217 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 HCLS1P14317 486 aaPredicted RBP16.18■□□□□ 0.18
CLK3-215ENST00000564353 ST3GAL1Q11201 340 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 GIMAP6Q6P9H5 292 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 CCDC129Q6ZRS4 1044 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 FOSBP53539 338 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 LINS1Q8NG48 757 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 GPATCH3Q96I76 525 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 DNAJC2Q99543 621 aaKnown RBP16.18■□□□□ 0.18
CLK3-215ENST00000564353 DNAJC5Q9H3Z4 198 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 USP25Q9UHP3 1055 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 TPCN1Q9ULQ1 816 aa16.18■□□□□ 0.18
CLK3-215ENST00000564353 UBE3BQ7Z3V4 1068 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 SEC62Q99442 399 aaKnown RBP16.17■□□□□ 0.18
CLK3-215ENST00000564353 CYP46A1Q9Y6A2 500 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 ADGRL3Q9HAR2 1447 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 TTC41PQ6P2S7 1318 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 HSPA2P54652 639 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 CREB3L3Q68CJ9 461 aa16.17■□□□□ 0.18
CLK3-215ENST00000564353 RUFY2Q8WXA3 655 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 LRRC2Q9BYS8 371 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 DDX21Q9NR30 783 aaKnown RBP eCLIP16.16■□□□□ 0.18
CLK3-215ENST00000564353 CCDC171Q6TFL3 1326 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 ALDH1L1O75891 902 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 F13A1P00488 732 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 EVI5LQ96CN4 794 aa16.16■□□□□ 0.18
CLK3-215ENST00000564353 DDX58O95786 925 aaKnown RBP16.15■□□□□ 0.18
CLK3-215ENST00000564353 C17orf53Q8N3J3 647 aaPredicted RBP16.15■□□□□ 0.18
CLK3-215ENST00000564353 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.15■□□□□ 0.18
CLK3-215ENST00000564353 NEURL1BA8MQ27 555 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 ZKSCAN1P17029 563 aaPredicted RBP16.14■□□□□ 0.17
CLK3-215ENST00000564353 MTX1Q13505 466 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 CAMK4Q16566 473 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 ZNF330Q9Y3S2 320 aaPredicted RBP16.14■□□□□ 0.17
CLK3-215ENST00000564353 ERBB3P21860 1342 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 RRP9O43818 475 aaKnown RBP16.14■□□□□ 0.17
CLK3-215ENST00000564353 NEXNQ0ZGT2 675 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 TFCP2Q12800 502 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 NECTIN1Q15223 517 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 PDLIM2Q96JY6 352 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 TFIP11Q9UBB9 837 aaKnown RBP16.14■□□□□ 0.17
CLK3-215ENST00000564353 SLC27A2O14975 620 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 GCKRQ14397 625 aa16.14■□□□□ 0.17
CLK3-215ENST00000564353 TUBGCP6Q96RT7 1819 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 DDX46Q7L014 1031 aaKnown RBP16.13■□□□□ 0.17
CLK3-215ENST00000564353 CDC37L1Q7L3B6 337 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 SLC52A2Q9HAB3 445 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 MTMR6Q9Y217 621 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 ERC1Q8IUD2 1116 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 SYAP1Q96A49 352 aaPredicted RBP16.13■□□□□ 0.17
CLK3-215ENST00000564353 DDX11Q96FC9 970 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 TAOK2Q9UL54 1235 aa16.13■□□□□ 0.17
CLK3-215ENST00000564353 LARP1BQ659C4 914 aaKnown RBP16.12■□□□□ 0.17
CLK3-215ENST00000564353 ANKRD13DQ6ZTN6 518 aa16.12■□□□□ 0.17
CLK3-215ENST00000564353 TTC5Q8N0Z6 440 aa16.12■□□□□ 0.17
CLK3-215ENST00000564353 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
CLK3-215ENST00000564353 ZSWIM6Q9HCJ5 1215 aa16.12■□□□□ 0.17
CLK3-215ENST00000564353 NOL7Q9UMY1 257 aaKnown RBP16.12■□□□□ 0.17
CLK3-215ENST00000564353 ZNF142P52746 1687 aaPredicted RBP16.12■□□□□ 0.17
CLK3-215ENST00000564353 DBNLQ9UJU6 430 aaKnown RBP16.12■□□□□ 0.17
CLK3-215ENST00000564353 NPHP3Q7Z494 1330 aa16.12■□□□□ 0.17
CLK3-215ENST00000564353 TCHHQ07283 1943 aa16.12■□□□□ 0.17
CLK3-215ENST00000564353 DBNDD2Q9BQY9 259 aa16.11■□□□□ 0.17
CLK3-215ENST00000564353 A0A087WZG4 1122 aa16.11■□□□□ 0.17
CLK3-215ENST00000564353 PHKG2P15735 406 aa16.11■□□□□ 0.17
CLK3-215ENST00000564353 TATP17735 454 aaPredicted RBP16.11■□□□□ 0.17
CLK3-215ENST00000564353 VPS53Q5VIR6 699 aa16.11■□□□□ 0.17
CLK3-215ENST00000564353 LARP1Q6PKG0 1096 aaKnown RBP16.11■□□□□ 0.17
CLK3-215ENST00000564353 NEUROD6Q96NK8 337 aa16.11■□□□□ 0.17
CLK3-215ENST00000564353 USP42Q9H9J4 1324 aaKnown RBP16.1■□□□□ 0.17
CLK3-215ENST00000564353 C19orf44Q9H6X5 657 aa16.1■□□□□ 0.17
CLK3-215ENST00000564353 TTC12Q9H892 705 aaPredicted RBP16.1■□□□□ 0.17
CLK3-215ENST00000564353 CYP27B1O15528 508 aa16.1■□□□□ 0.17
CLK3-215ENST00000564353 JAK2O60674 1132 aa16.1■□□□□ 0.17
CLK3-215ENST00000564353 CEBPZQ03701 1054 aaKnown RBP16.1■□□□□ 0.17
CLK3-215ENST00000564353 MAP4K1Q92918 833 aa16.1■□□□□ 0.17
CLK3-215ENST00000564353 NAP1L2Q9ULW6 460 aaPredicted RBP16.1■□□□□ 0.17
CLK3-215ENST00000564353 BLOC1S2Q6QNY1 142 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 ZKSCAN5Q9Y2L8 839 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLK3-215ENST00000564353 MED1Q15648 1581 aaPredicted RBP16.09■□□□□ 0.17
CLK3-215ENST00000564353 A0A0G2JLW4 131 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 CCDC183Q5T5S1 534 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 OFD1O75665 1012 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 IL17RAQ96F46 866 aa16.09■□□□□ 0.17
CLK3-215ENST00000564353 KDM6AO15550 1401 aaPredicted RBP16.08■□□□□ 0.17
CLK3-215ENST00000564353 HSP90B1P14625 803 aaKnown RBP16.08■□□□□ 0.16
CLK3-215ENST00000564353 TIMM10P62072 90 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 UBE2HP62256 183 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 CKAP2LQ8IYA6 745 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 SPC24Q8NBT2 197 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 ZNF594Q96JF6 807 aaPredicted RBP16.08■□□□□ 0.16
CLK3-215ENST00000564353 METTL22Q9BUU2 404 aaPredicted RBP16.08■□□□□ 0.16
CLK3-215ENST00000564353 CHMP4AQ9BY43 222 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 ADCY5O95622 1261 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 PTPN12Q05209 780 aaKnown RBP16.08■□□□□ 0.16
CLK3-215ENST00000564353 LMBR1LQ6UX01 489 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms