RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 GRIPAP1Q4V328 841 aa22.5■■□□□ 1.19
VPS9D1-203ENST00000563798 OLFM4Q6UX06 510 aa22.5■■□□□ 1.19
VPS9D1-203ENST00000563798 CRAMP1Q96RY5 1269 aa22.5■■□□□ 1.19
VPS9D1-203ENST00000563798 PSMD1Q99460 953 aa22.5■■□□□ 1.19
VPS9D1-203ENST00000563798 DDNO94850 711 aaPredicted RBP22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 ANXA1P04083 346 aa22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 HSP90AB3PQ58FF7 597 aa22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 COPS6Q7L5N1 327 aa22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 L3MBTL3Q96JM7 780 aaPredicted RBP22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 CFAP44Q96MT7 982 aa22.49■■□□□ 1.19
VPS9D1-203ENST00000563798 RPGRQ92834 1020 aaKnown RBP22.48■■□□□ 1.19
VPS9D1-203ENST00000563798 ZNF277Q9NRM2 450 aaPredicted RBP22.48■■□□□ 1.19
VPS9D1-203ENST00000563798 KRT24Q2M2I5 525 aa22.47■■□□□ 1.19
VPS9D1-203ENST00000563798 XAGE3Q8WTP9 111 aa22.47■■□□□ 1.19
VPS9D1-203ENST00000563798 RBM17Q96I25 401 aaKnown RBP22.47■■□□□ 1.19
VPS9D1-203ENST00000563798 UTP14AQ9BVJ6 771 aaKnown RBP22.47■■□□□ 1.19
VPS9D1-203ENST00000563798 SYNE4Q8N205 404 aa22.46■■□□□ 1.19
VPS9D1-203ENST00000563798 KLRG1Q96E93 195 aa22.46■■□□□ 1.19
VPS9D1-203ENST00000563798 NLRP3Q96P20 1036 aa22.46■■□□□ 1.19
VPS9D1-203ENST00000563798 IQCA1LA6NCM1 817 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 FZD9O00144 591 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 ZNF853P0CG23 659 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 IARSP41252 1262 aaKnown RBP22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 TCIRG1Q13488 830 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 C3orf67Q6ZVT6 689 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 NLRP10Q86W26 655 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 JMYQ8N9B5 988 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 NECTIN2Q92692 538 aa22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 LAS1LQ9Y4W2 734 aaKnown RBP22.45■■□□□ 1.18
VPS9D1-203ENST00000563798 HTRA3P83110 453 aa22.44■■□□□ 1.18
VPS9D1-203ENST00000563798 ANKRD36CQ5JPF3 1778 aa22.44■■□□□ 1.18
VPS9D1-203ENST00000563798 AIMP1Q12904 312 aaKnown RBP22.43■■□□□ 1.18
VPS9D1-203ENST00000563798 HDGFL1Q5TGJ6 251 aa22.43■■□□□ 1.18
VPS9D1-203ENST00000563798 CHPF2Q9P2E5 772 aa22.43■■□□□ 1.18
VPS9D1-203ENST00000563798 DBF4Q9UBU7 674 aaPredicted RBP22.43■■□□□ 1.18
VPS9D1-203ENST00000563798 SCN4AP35499 1836 aa22.43■■□□□ 1.18
VPS9D1-203ENST00000563798 ZNF541Q9H0D2 1346 aa22.42■■□□□ 1.18
VPS9D1-203ENST00000563798 APAF1O14727 1248 aa22.42■■□□□ 1.18
VPS9D1-203ENST00000563798 CHADLQ6NUI6 762 aa22.42■■□□□ 1.18
VPS9D1-203ENST00000563798 PLBD2Q8NHP8 589 aa22.42■■□□□ 1.18
VPS9D1-203ENST00000563798 MBIPQ9NS73 344 aa22.42■■□□□ 1.18
VPS9D1-203ENST00000563798 PPEF1O14829 653 aaPredicted RBP22.41■■□□□ 1.18
VPS9D1-203ENST00000563798 DUSP27Q5VZP5 1158 aa22.41■■□□□ 1.18
VPS9D1-203ENST00000563798 TAF1DQ9H5J8 278 aaPredicted RBP22.41■■□□□ 1.18
VPS9D1-203ENST00000563798 IFT57Q9NWB7 429 aa22.41■■□□□ 1.18
VPS9D1-203ENST00000563798 CALD1Q05682 793 aaKnown RBP22.4■■□□□ 1.18
VPS9D1-203ENST00000563798 HYPKQ9NX55 129 aa22.4■■□□□ 1.18
VPS9D1-203ENST00000563798 ATP6V0A2Q9Y487 856 aa22.4■■□□□ 1.18
VPS9D1-203ENST00000563798 GNAI1P63096 354 aa22.39■■□□□ 1.17
VPS9D1-203ENST00000563798 ANKRD13DQ6ZTN6 518 aa22.39■■□□□ 1.17
VPS9D1-203ENST00000563798 GPC2Q8N158 579 aa22.39■■□□□ 1.17
VPS9D1-203ENST00000563798 JDP2Q8WYK2 163 aa22.39■■□□□ 1.17
VPS9D1-203ENST00000563798 VPS33BQ9H267 617 aa22.39■■□□□ 1.17
VPS9D1-203ENST00000563798 SH3TC1Q8TE82 1336 aa22.38■■□□□ 1.17
VPS9D1-203ENST00000563798 BBOX1O75936 387 aa22.38■■□□□ 1.17
VPS9D1-203ENST00000563798 LDHDQ86WU2 507 aa22.38■■□□□ 1.17
VPS9D1-203ENST00000563798 ISCA1Q9BUE6 129 aa22.38■■□□□ 1.17
VPS9D1-203ENST00000563798 TRMT112Q9UI30 125 aaKnown RBP22.38■■□□□ 1.17
VPS9D1-203ENST00000563798 ABCC4O15439 1325 aa22.37■■□□□ 1.17
VPS9D1-203ENST00000563798 COL4A5P29400 1685 aa22.37■■□□□ 1.17
VPS9D1-203ENST00000563798 POTEIP0CG38 1075 aa22.37■■□□□ 1.17
VPS9D1-203ENST00000563798 POTEJP0CG39 1038 aa22.37■■□□□ 1.17
VPS9D1-203ENST00000563798 HACL1Q9UJ83 578 aa22.37■■□□□ 1.17
VPS9D1-203ENST00000563798 TRIM28Q13263 835 aaKnown RBP22.36■■□□□ 1.17
VPS9D1-203ENST00000563798 RTFDC1Q9BY42 306 aaPredicted RBP22.36■■□□□ 1.17
VPS9D1-203ENST00000563798 HCLS1P14317 486 aaPredicted RBP22.35■■□□□ 1.17
VPS9D1-203ENST00000563798 SP8Q8IXZ3 490 aa22.35■■□□□ 1.17
VPS9D1-203ENST00000563798 LAMB2P55268 1798 aa22.35■■□□□ 1.17
VPS9D1-203ENST00000563798 EIF6P56537 245 aaKnown RBP22.34■■□□□ 1.17
VPS9D1-203ENST00000563798 SLC51AQ86UW1 340 aa22.34■■□□□ 1.17
VPS9D1-203ENST00000563798 PNMA8AQ86V59 439 aaPredicted RBP22.34■■□□□ 1.17
VPS9D1-203ENST00000563798 TMX4Q9H1E5 349 aaPredicted RBP22.34■■□□□ 1.17
VPS9D1-203ENST00000563798 ADAMTSL1Q8N6G6 1762 aa22.34■■□□□ 1.17
VPS9D1-203ENST00000563798 PASKQ96RG2 1323 aa22.33■■□□□ 1.17
VPS9D1-203ENST00000563798 EPHX2P34913 555 aa22.33■■□□□ 1.17
VPS9D1-203ENST00000563798 ZEB1P37275 1124 aaPredicted RBP22.33■■□□□ 1.17
VPS9D1-203ENST00000563798 LARGE2Q8N3Y3 721 aa22.33■■□□□ 1.17
VPS9D1-203ENST00000563798 CREBZFQ9NS37 354 aa22.33■■□□□ 1.17
VPS9D1-203ENST00000563798 GRAPQ13588 217 aa22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 DDX46Q7L014 1031 aaKnown RBP22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 TMC4Q7Z404 712 aa22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 SUPT20HQ8NEM7 779 aa22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 GRAPLQ8TC17 118 aaPredicted RBP22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 CHMP4AQ9BY43 222 aa22.32■■□□□ 1.16
VPS9D1-203ENST00000563798 TCERG1O14776 1098 aaKnown RBP22.31■■□□□ 1.16
VPS9D1-203ENST00000563798 ITGBL1O95965 494 aaPredicted RBP22.31■■□□□ 1.16
VPS9D1-203ENST00000563798 SF3B3Q15393 1217 aaKnown RBP22.31■■□□□ 1.16
VPS9D1-203ENST00000563798 CCDC27Q2M243 656 aa22.31■■□□□ 1.16
VPS9D1-203ENST00000563798 CCDC184Q52MB2 194 aa22.31■■□□□ 1.16
VPS9D1-203ENST00000563798 NCBP3Q53F19 620 aaKnown RBP22.3■■□□□ 1.16
VPS9D1-203ENST00000563798 DDX60Q8IY21 1712 aaKnown RBP22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 ATP5J2-PTCD1G3V325 749 aa22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 PPIP5K2O43314 1243 aa22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 NIM1KQ8IY84 436 aa22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 MPNDQ8N594 471 aa22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 C8orf58Q8NAV2 365 aa22.29■■□□□ 1.16
VPS9D1-203ENST00000563798 AOC3Q16853 763 aa22.28■■□□□ 1.16
VPS9D1-203ENST00000563798 DPP8Q6V1X1 898 aaPredicted RBP22.28■■□□□ 1.16
VPS9D1-203ENST00000563798 FAM89AQ96GI7 184 aa22.28■■□□□ 1.16
VPS9D1-203ENST00000563798 PHAXQ9H814 394 aaKnown RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms