RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 TPD52L1Q16890 204 aaPredicted RBP14.01□□□□□ -0.17
ABCA3-203ENST00000563623 C1orf141Q5JVX7 400 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 EVI5LQ96CN4 794 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 TNRQ92752 1358 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 TPM3P06753 285 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 BEND3Q5T5X7 828 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 LRRC2Q9BYS8 371 aa14.01□□□□□ -0.17
ABCA3-203ENST00000563623 LARP1Q6PKG0 1096 aaKnown RBP14□□□□□ -0.17
ABCA3-203ENST00000563623 LRRC59Q96AG4 307 aaKnown RBP14□□□□□ -0.17
ABCA3-203ENST00000563623 SIRT1Q96EB6 747 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 EDC3Q96F86 508 aaKnown RBP14□□□□□ -0.17
ABCA3-203ENST00000563623 DNAJC2Q99543 621 aaKnown RBP14□□□□□ -0.17
ABCA3-203ENST00000563623 DNAJC25Q9H1X3 360 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 OVOS2A0A0J9YW53 1432 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 OVOS2Q6IE36 1432 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 RIC3Q7Z5B4 369 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 ERC1Q8IUD2 1116 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 NRBP1Q9UHY1 535 aa14□□□□□ -0.17
ABCA3-203ENST00000563623 BECN2A8MW95 431 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 MYL6BP14649 208 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 EIF4A1P60842 406 aaKnown RBP13.99□□□□□ -0.17
ABCA3-203ENST00000563623 TTC41PQ6P2S7 1318 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 KIAA1524Q8TCG1 905 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 NDUFB9Q9Y6M9 179 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 SETD1BQ9UPS6 1966 aaKnown RBP13.99□□□□□ -0.17
ABCA3-203ENST00000563623 ZNF165P49910 485 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 SMAP1Q8IYB5 467 aaPredicted RBP13.99□□□□□ -0.17
ABCA3-203ENST00000563623 KCNF1Q9H3M0 494 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 ZSWIM6Q9HCJ5 1215 aa13.99□□□□□ -0.17
ABCA3-203ENST00000563623 RIMS1Q86UR5 1692 aaKnown RBP13.99□□□□□ -0.17
ABCA3-203ENST00000563623 U2AF2P26368 475 aaKnown RBP eCLIP13.98□□□□□ -0.17
ABCA3-203ENST00000563623 ZNF710Q8N1W2 664 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 CHMP4AQ9BY43 222 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 CBX8Q9HC52 389 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 SLC27A2O14975 620 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 PROSER3Q2NL68 480 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 DBF4Q9UBU7 674 aaPredicted RBP13.98□□□□□ -0.17
ABCA3-203ENST00000563623 TNNT1P13805 278 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 FILIP1Q7Z7B0 1213 aa13.98□□□□□ -0.17
ABCA3-203ENST00000563623 A0A0D9SFI3 127 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 NPHP1O15259 732 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 COL9A3Q14050 684 aaPredicted RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 SCAND2PQ9GZW5 306 aaPredicted RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 HDAC5Q9UQL6 1122 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 TSPOAP1O95153 1857 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 CEP170BQ9Y4F5 1589 aaPredicted RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 JAK2O60674 1132 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 ZRSR1Q15695 479 aaKnown RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 TLR7Q9NYK1 1049 aaKnown RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 CLIP2Q9UDT6 1046 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 TMEM2Q9UHN6 1383 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 PRAMEF22A3QJZ6 481 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 EPB41L2O43491 1005 aaKnown RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 NBPF6Q5VWK0 638 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 EAF2Q96CJ1 260 aaPredicted RBP13.97□□□□□ -0.17
ABCA3-203ENST00000563623 NBPF4Q96M43 638 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 MRVI1Q9Y6F6 885 aa13.97□□□□□ -0.17
ABCA3-203ENST00000563623 GUCY1B3Q02153 619 aa13.96□□□□□ -0.17
ABCA3-203ENST00000563623 HIP1O00291 1037 aa13.96□□□□□ -0.17
ABCA3-203ENST00000563623 PSME1Q06323 249 aa13.96□□□□□ -0.17
ABCA3-203ENST00000563623 ANKRD1Q15327 319 aa13.96□□□□□ -0.17
ABCA3-203ENST00000563623 TAF6LQ9Y6J9 622 aa13.96□□□□□ -0.17
ABCA3-203ENST00000563623 ATP2B3Q16720 1220 aa13.96□□□□□ -0.18
ABCA3-203ENST00000563623 IPO4Q8TEX9 1081 aaKnown RBP13.96□□□□□ -0.18
ABCA3-203ENST00000563623 BRF1Q92994 677 aa13.96□□□□□ -0.18
ABCA3-203ENST00000563623 BICC1Q9H694 974 aaKnown RBP13.96□□□□□ -0.18
ABCA3-203ENST00000563623 A0A087WWV3 80 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 DDX58O95786 925 aaKnown RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 PLEKHO1Q53GL0 409 aaPredicted RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 CCDC112Q8NEF3 446 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 SUCLG2Q96I99 432 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 TRMT1Q9NXH9 659 aaKnown RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 USP31Q70CQ4 1352 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 ITSN1Q15811 1721 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 NR1I2O75469 434 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 PIP4K2AP48426 406 aaPredicted RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 NECTIN1Q15223 517 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 LEO1Q8WVC0 666 aaPredicted RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 RICTORQ6R327 1708 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 NEXNQ0ZGT2 675 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 CCDC129Q6ZRS4 1044 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 TM6SF1Q9BZW5 370 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 DDX19AQ9NUU7 478 aaKnown RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 SPTLC3Q9NUV7 552 aa13.95□□□□□ -0.18
ABCA3-203ENST00000563623 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 V9GYY5 206 aaPredicted RBP13.95□□□□□ -0.18
ABCA3-203ENST00000563623 ST3GAL1Q11201 340 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 ZNF771Q7L3S4 317 aaPredicted RBP13.94□□□□□ -0.18
ABCA3-203ENST00000563623 FUCA2Q9BTY2 467 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 KSR2Q6VAB6 950 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 KDRP35968 1356 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 GRM8O00222 908 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 CCT2P78371 535 aaKnown RBP13.94□□□□□ -0.18
ABCA3-203ENST00000563623 CCDC73Q6ZRK6 1079 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 FMNL2Q96PY5 1086 aa13.94□□□□□ -0.18
ABCA3-203ENST00000563623 NPHP3Q7Z494 1330 aa13.93□□□□□ -0.18
ABCA3-203ENST00000563623 RPS6KB1P23443 525 aa13.93□□□□□ -0.18
ABCA3-203ENST00000563623 NAA30Q147X3 362 aaPredicted RBP13.93□□□□□ -0.18
ABCA3-203ENST00000563623 ERCC4Q92889 916 aaPredicted RBP13.93□□□□□ -0.18
ABCA3-203ENST00000563623 NEUROD6Q96NK8 337 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms