RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 TNMDQ9H2S6 317 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 TEFQ10587 303 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 KCNB2Q92953 911 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 NMIQ13287 307 aaPredicted RBP16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 MRVI1Q9Y6F6 885 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 UBR1Q8IWV7 1749 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 DACT1Q9NYF0 836 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 TFIP11Q9UBB9 837 aaKnown RBP16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 MAP3K2Q9Y2U5 619 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 PIK3C2AO00443 1686 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 HOXB7P09629 217 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 BLOC1S2Q6QNY1 142 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 PDCL2Q8N4E4 241 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 SPATA32Q96LK8 384 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 ADCY9O60503 1353 aa16.59■□□□□ 0.25
VPS9D1-202ENST00000561976 BTBD11A6QL63 1104 aa16.58■□□□□ 0.25
VPS9D1-202ENST00000561976 SLC27A2O14975 620 aa16.58■□□□□ 0.25
VPS9D1-202ENST00000561976 MTX1Q13505 466 aa16.58■□□□□ 0.25
VPS9D1-202ENST00000561976 ANO6Q4KMQ2 910 aa16.58■□□□□ 0.25
VPS9D1-202ENST00000561976 NWD1Q149M9 1564 aa16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 HIP1O00291 1037 aa16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 PDIA4P13667 645 aaKnown RBP16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 STK3Q13188 491 aa16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 MAP4K1Q92918 833 aa16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 CCDC8Q9H0W5 538 aaPredicted RBP16.58■□□□□ 0.24
VPS9D1-202ENST00000561976 RNF20Q5VTR2 975 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 CCDC186Q7Z3E2 898 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 SCAND2PQ9GZW5 306 aaPredicted RBP16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 ELP1O95163 1332 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 CEMIPQ8WUJ3 1361 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 ANKRD1Q15327 319 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 CWF19L2Q2TBE0 894 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 FSD1Q9BTV5 496 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 TRIM5Q9C035 493 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 CBX8Q9HC52 389 aa16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 DBF4Q9UBU7 674 aaPredicted RBP16.57■□□□□ 0.24
VPS9D1-202ENST00000561976 G3BP1Q13283 466 aaKnown RBP eCLIP16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 COL9A3Q14050 684 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 PLPPR3Q6T4P5 718 aa16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 HDAC5Q9UQL6 1122 aa16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 RGPD8O14715 1765 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 LARP1Q6PKG0 1096 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 BOLA2Q9H3K6 86 aa16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 CRYBG1Q9Y4K1 1723 aa16.56■□□□□ 0.24
VPS9D1-202ENST00000561976 ALDH1L1O75891 902 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 ATP2B3Q16720 1220 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 BICD2Q8TD16 824 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 ZHX1Q9UKY1 873 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 MPRIPQ6WCQ1 1025 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 DDX19AQ9NUU7 478 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 DIP2AQ14689 1571 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 A0A0D9SFI3 127 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 SPDYE4A6NLX3 237 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 DMTNQ08495 405 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 LRMPQ12912 555 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 EAF2Q96CJ1 260 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
VPS9D1-202ENST00000561976 NPHP3Q7Z494 1330 aa16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 RPS6KB1P23443 525 aa16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 ZNF530Q6P9A1 599 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 LEO1Q8WVC0 666 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 C16orf45Q96MC5 204 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 SIL1Q9H173 461 aa16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 ZSCAN20P17040 1043 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 KSR2Q6VAB6 950 aa16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 NRBP1Q9UHY1 535 aa16.54■□□□□ 0.24
VPS9D1-202ENST00000561976 A0A0U1RQG5 324 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 SASH1O94885 1247 aa16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 PROSER3Q2NL68 480 aa16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 CEBPAP49715 358 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 CLSTN2Q9H4D0 955 aa16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 TLR7Q9NYK1 1049 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 TAF6LQ9Y6J9 622 aa16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-202ENST00000561976 ZNF165P49910 485 aa16.52■□□□□ 0.24
VPS9D1-202ENST00000561976 ZNF75DP51815 510 aa16.52■□□□□ 0.24
VPS9D1-202ENST00000561976 SUCLG2Q96I99 432 aa16.52■□□□□ 0.24
VPS9D1-202ENST00000561976 TBX22Q9Y458 520 aa16.52■□□□□ 0.24
VPS9D1-202ENST00000561976 KIF13AQ9H1H9 1805 aa16.52■□□□□ 0.23
VPS9D1-202ENST00000561976 NR1I2O75469 434 aa16.52■□□□□ 0.23
VPS9D1-202ENST00000561976 TOB2Q14106 344 aaPredicted RBP16.52■□□□□ 0.23
VPS9D1-202ENST00000561976 DNAJC25Q9H1X3 360 aa16.52■□□□□ 0.23
VPS9D1-202ENST00000561976 BICC1Q9H694 974 aaKnown RBP16.52■□□□□ 0.23
VPS9D1-202ENST00000561976 AIMP1Q12904 312 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 UTP14CQ5TAP6 766 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 IP6K1Q92551 441 aa16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 GRM8O00222 908 aa16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 CTIFO43310 598 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 U2AF2P26368 475 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 AKAP4Q5JQC9 854 aa16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 ANKRD7Q92527 254 aa16.51■□□□□ 0.23
VPS9D1-202ENST00000561976 ZSCAN25Q6NSZ9 544 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 CLIP2Q9UDT6 1046 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 H3BQV1 296 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 TNNT1P13805 278 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 HSP90B1P14625 803 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 PLEKHO1Q53GL0 409 aaPredicted RBP16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 IFFO2Q5TF58 517 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 ZNF589Q86UQ0 364 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms