RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 CCDC93Q567U6 631 aa20.81■□□□□ 0.92
LMX1B-204ENST00000561065 HDGFL1Q5TGJ6 251 aa20.81■□□□□ 0.92
LMX1B-204ENST00000561065 HOXB7P09629 217 aa20.8■□□□□ 0.92
LMX1B-204ENST00000561065 SOGA3Q5TF21 947 aa20.8■□□□□ 0.92
LMX1B-204ENST00000561065 COL4A5P29400 1685 aa20.8■□□□□ 0.92
LMX1B-204ENST00000561065 PARP10Q53GL7 1025 aa20.79■□□□□ 0.92
LMX1B-204ENST00000561065 DUSP27Q5VZP5 1158 aa20.79■□□□□ 0.92
LMX1B-204ENST00000561065 RBM46Q8TBY0 533 aaKnown RBP20.79■□□□□ 0.92
LMX1B-204ENST00000561065 POTECB2RU33 542 aa20.78■□□□□ 0.92
LMX1B-204ENST00000561065 IFT57Q9NWB7 429 aa20.78■□□□□ 0.92
LMX1B-204ENST00000561065 TAF1P21675 1872 aa20.78■□□□□ 0.92
LMX1B-204ENST00000561065 HOXA10P31260 410 aaPredicted RBP20.78■□□□□ 0.92
LMX1B-204ENST00000561065 NLRP10Q86W26 655 aa20.78■□□□□ 0.92
LMX1B-204ENST00000561065 FKBP4Q02790 459 aaKnown RBP eCLIP20.77■□□□□ 0.91
LMX1B-204ENST00000561065 PPP1R42Q7Z4L9 355 aa20.77■□□□□ 0.91
LMX1B-204ENST00000561065 ZNF277Q9NRM2 450 aaPredicted RBP20.77■□□□□ 0.91
LMX1B-204ENST00000561065 COL4A1P02462 1669 aa20.76■□□□□ 0.91
LMX1B-204ENST00000561065 ALDH1B1P30837 517 aa20.76■□□□□ 0.91
LMX1B-204ENST00000561065 C16orf71Q8IYS4 520 aaPredicted RBP20.76■□□□□ 0.91
LMX1B-204ENST00000561065 SYNE4Q8N205 404 aa20.76■□□□□ 0.91
LMX1B-204ENST00000561065 ZNF428Q96B54 188 aa20.76■□□□□ 0.91
LMX1B-204ENST00000561065 UTP14AQ9BVJ6 771 aaKnown RBP20.76■□□□□ 0.91
LMX1B-204ENST00000561065 GNAI1P63096 354 aa20.75■□□□□ 0.91
LMX1B-204ENST00000561065 TCIRG1Q13488 830 aa20.75■□□□□ 0.91
LMX1B-204ENST00000561065 HSP90AB3PQ58FF7 597 aa20.75■□□□□ 0.91
LMX1B-204ENST00000561065 RPGRQ92834 1020 aaKnown RBP20.75■□□□□ 0.91
LMX1B-204ENST00000561065 DBF4Q9UBU7 674 aaPredicted RBP20.75■□□□□ 0.91
LMX1B-204ENST00000561065 SLC10A5Q5PT55 438 aa20.74■□□□□ 0.91
LMX1B-204ENST00000561065 LRRC37AA6NMS7 1700 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 RNF123Q5XPI4 1314 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 ZNF541Q9H0D2 1346 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 DDNO94850 711 aaPredicted RBP20.73■□□□□ 0.91
LMX1B-204ENST00000561065 VEGFAP15692 232 aaPredicted RBP20.73■□□□□ 0.91
LMX1B-204ENST00000561065 C8orf58Q8NAV2 365 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 PLBD2Q8NHP8 589 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 CRAMP1Q96RY5 1269 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 SCN4AP35499 1836 aa20.73■□□□□ 0.91
LMX1B-204ENST00000561065 ABCC4O15439 1325 aa20.72■□□□□ 0.91
LMX1B-204ENST00000561065 ELL2O00472 640 aaPredicted RBP20.72■□□□□ 0.91
LMX1B-204ENST00000561065 HCLS1P14317 486 aaPredicted RBP20.72■□□□□ 0.91
LMX1B-204ENST00000561065 CALD1Q05682 793 aaKnown RBP20.72■□□□□ 0.91
LMX1B-204ENST00000561065 FSTL1Q12841 308 aa20.72■□□□□ 0.91
LMX1B-204ENST00000561065 RTKN2Q8IZC4 609 aa20.72■□□□□ 0.91
LMX1B-204ENST00000561065 PPEF1O14829 653 aaPredicted RBP20.71■□□□□ 0.91
LMX1B-204ENST00000561065 APLP1P51693 650 aa20.71■□□□□ 0.91
LMX1B-204ENST00000561065 RBM17Q96I25 401 aaKnown RBP20.71■□□□□ 0.91
LMX1B-204ENST00000561065 ISCA1Q9BUE6 129 aa20.71■□□□□ 0.91
LMX1B-204ENST00000561065 MRS2Q9HD23 443 aa20.71■□□□□ 0.91
LMX1B-204ENST00000561065 IARSP41252 1262 aaKnown RBP20.7■□□□□ 0.9
LMX1B-204ENST00000561065 HTRA3P83110 453 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 DPY19L2Q6NUT2 758 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 ANKRD13DQ6ZTN6 518 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 TSPYL6Q8N831 410 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 TSR2Q969E8 191 aaKnown RBP20.7■□□□□ 0.9
LMX1B-204ENST00000561065 NLRP3Q96P20 1036 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 PSMD1Q99460 953 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 PHAXQ9H814 394 aaKnown RBP20.7■□□□□ 0.9
LMX1B-204ENST00000561065 HYPKQ9NX55 129 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 TRMT112Q9UI30 125 aaKnown RBP20.7■□□□□ 0.9
LMX1B-204ENST00000561065 DUOX1Q9NRD9 1551 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 SH3TC1Q8TE82 1336 aa20.7■□□□□ 0.9
LMX1B-204ENST00000561065 ADAMTSL1Q8N6G6 1762 aa20.69■□□□□ 0.9
LMX1B-204ENST00000561065 LTBP1Q14766 1721 aa20.69■□□□□ 0.9
LMX1B-204ENST00000561065 ATP5J2-PTCD1G3V325 749 aa20.69■□□□□ 0.9
LMX1B-204ENST00000561065 TCERG1O14776 1098 aaKnown RBP20.69■□□□□ 0.9
LMX1B-204ENST00000561065 CCDC27Q2M243 656 aa20.69■□□□□ 0.9
LMX1B-204ENST00000561065 SMC1BQ8NDV3 1235 aa20.69■□□□□ 0.9
LMX1B-204ENST00000561065 POTEIP0CG38 1075 aa20.68■□□□□ 0.9
LMX1B-204ENST00000561065 POTEJP0CG39 1038 aa20.68■□□□□ 0.9
LMX1B-204ENST00000561065 WWC1Q8IX03 1113 aa20.68■□□□□ 0.9
LMX1B-204ENST00000561065 CC2D2BQ6DHV5 1058 aa20.67■□□□□ 0.9
LMX1B-204ENST00000561065 L3MBTL3Q96JM7 780 aaPredicted RBP20.67■□□□□ 0.9
LMX1B-204ENST00000561065 FZD9O00144 591 aa20.66■□□□□ 0.9
LMX1B-204ENST00000561065 DNAJC5GQ8N7S2 189 aa20.66■□□□□ 0.9
LMX1B-204ENST00000561065 FAM89AQ96GI7 184 aa20.65■□□□□ 0.9
LMX1B-204ENST00000561065 ATP6V0A2Q9Y487 856 aa20.65■□□□□ 0.9
LMX1B-204ENST00000561065 RTL5Q5HYW3 569 aaPredicted RBP20.63■□□□□ 0.89
LMX1B-204ENST00000561065 GOLGA2Q08379 1002 aa20.62■□□□□ 0.89
LMX1B-204ENST00000561065 TRIM28Q13263 835 aaKnown RBP20.62■□□□□ 0.89
LMX1B-204ENST00000561065 RIC3Q7Z5B4 369 aa20.62■□□□□ 0.89
LMX1B-204ENST00000561065 PCNTO95613 3336 aa20.62■□□□□ 0.89
LMX1B-204ENST00000561065 GRAPQ13588 217 aa20.61■□□□□ 0.89
LMX1B-204ENST00000561065 IL16Q14005 1332 aa20.61■□□□□ 0.89
LMX1B-204ENST00000561065 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
LMX1B-204ENST00000561065 GRAPLQ8TC17 118 aaPredicted RBP20.61■□□□□ 0.89
LMX1B-204ENST00000561065 MYD88Q99836 296 aa20.61■□□□□ 0.89
LMX1B-204ENST00000561065 CHMP4AQ9BY43 222 aa20.61■□□□□ 0.89
LMX1B-204ENST00000561065 TAF1DQ9H5J8 278 aaPredicted RBP20.61■□□□□ 0.89
LMX1B-204ENST00000561065 FANCIQ9NVI1 1328 aa20.6■□□□□ 0.89
LMX1B-204ENST00000561065 GRIPAP1Q4V328 841 aa20.6■□□□□ 0.89
LMX1B-204ENST00000561065 NCBP3Q53F19 620 aaKnown RBP20.6■□□□□ 0.89
LMX1B-204ENST00000561065 DDX46Q7L014 1031 aaKnown RBP20.6■□□□□ 0.89
LMX1B-204ENST00000561065 MYH3P11055 1940 aa20.59■□□□□ 0.89
LMX1B-204ENST00000561065 SF3B3Q15393 1217 aaKnown RBP20.59■□□□□ 0.89
LMX1B-204ENST00000561065 AOC3Q16853 763 aa20.59■□□□□ 0.89
LMX1B-204ENST00000561065 LARGE2Q8N3Y3 721 aa20.59■□□□□ 0.89
LMX1B-204ENST00000561065 CELF1Q92879 486 aaKnown RBP20.59■□□□□ 0.89
LMX1B-204ENST00000561065 RTFDC1Q9BY42 306 aaPredicted RBP20.59■□□□□ 0.89
LMX1B-204ENST00000561065 IQCA1LA6NCM1 817 aa20.58■□□□□ 0.89
LMX1B-204ENST00000561065 IRS4O14654 1257 aaPredicted RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms