RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 IFIT1P09914 478 aaKnown RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 POLD1P28340 1107 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 KIF1BPQ96EK5 621 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 METTL22Q9BUU2 404 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 LAMC1P11047 1609 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 ITGA6P23229 1130 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 CCDC152Q4G0S7 254 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 LARP6Q9BRS8 491 aaKnown RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 BCS1LQ9Y276 419 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 DCAF8L1A6NGE4 600 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 SETD1AO15047 1707 aaKnown RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 ECM2O94769 699 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 GCKRQ14397 625 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 EZH2Q15910 746 aaKnown RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 GCC1Q96CN9 775 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 CDC5LQ99459 802 aaKnown RBP6.61□□□□□ -1.35
VPS13C-209ENST00000560637 TRIM34Q9BYJ4 488 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 BLMP54132 1417 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 DHX16O60231 1041 aaKnown RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 MX1P20591 662 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 CNTROBQ8N137 903 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 RHPN1Q8TCX5 695 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 DDRGK1Q96HY6 314 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 MMP10P09238 476 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 ATXN8OSP0DMR3 200 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 TFCP2Q12800 502 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 GRM1Q13255 1194 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 MAPK8IP2Q13387 824 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 CEP85Q6P2H3 762 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 POTEAQ6S8J7 498 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 USP44Q9H0E7 712 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 SEC31BQ9NQW1 1179 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 THRAP3Q9Y2W1 955 aaKnown RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 NEURL1BA8MQ27 555 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 NBPF26B4DH59 902 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 ZBTB7BO15156 539 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 TCIRG1Q13488 830 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 ITPK1Q13572 414 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 CAVIN4Q5BKX8 364 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 NBPF10Q6P3W6 841 aaKnown RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 ERC1Q8IUD2 1116 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 NBPF15Q8N660 670 aa6.6□□□□□ -1.35
VPS13C-209ENST00000560637 EDC3Q96F86 508 aaKnown RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 GPR101Q96P66 508 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-209ENST00000560637 COL16A1Q07092 1604 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-209ENST00000560637 PIBF1Q8WXW3 757 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 GNL3LQ9NVN8 582 aaKnown RBP6.59□□□□□ -1.35
VPS13C-209ENST00000560637 HEG1Q9ULI3 1381 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 DTNBO60941 627 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 ATP2B3Q16720 1220 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 ILDR2Q71H61 639 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 ARHGEF1Q92888 912 aaKnown RBP6.59□□□□□ -1.35
VPS13C-209ENST00000560637 PUS3Q9BZE2 481 aaKnown RBP6.59□□□□□ -1.35
VPS13C-209ENST00000560637 ZBTB40Q9NUA8 1239 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 NHSL1Q5SYE7 1610 aa6.59□□□□□ -1.35
VPS13C-209ENST00000560637 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 MINDY4BA8MYZ0 360 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ALDH1L1O75891 902 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ZNF853P0CG23 659 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 GREM2Q9H772 168 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 MEGF6O75095 1541 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ARHGEF28Q8N1W1 1705 aaKnown RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 HAND2P61296 217 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 GNL2Q13823 731 aaKnown RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ERFEQ4G0M1 354 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 LRRC24Q50LG9 513 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 RUFY2Q8WXA3 655 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ARHGAP45Q92619 1136 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 UPF3BQ9BZI7 483 aaKnown RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ZNF521Q96K83 1311 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 INTS3Q68E01 1043 aaKnown RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 DZIP1Q86YF9 867 aaKnown RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ANKRD44Q8N8A2 993 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 ZNF526Q8TF50 670 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-209ENST00000560637 DBNDD2Q9BQY9 259 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 GJA3Q9Y6H8 435 aa6.58□□□□□ -1.36
VPS13C-209ENST00000560637 CDC45O75419 566 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 UFL1O94874 794 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 SERPINB2P05120 415 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 SLC5A1P13866 664 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 ZKSCAN1P17029 563 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-209ENST00000560637 ATP8B2P98198 1209 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 STK3Q13188 491 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 BEND3Q5T5X7 828 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 SUSD4Q5VX71 490 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 NFXL1Q6ZNB6 911 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 TBC1D9Q6ZT07 1266 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 MIGA1Q8NAN2 632 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 BBXQ8WY36 941 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-209ENST00000560637 ZC3H12CQ9C0D7 883 aaKnown RBP6.57□□□□□ -1.36
VPS13C-209ENST00000560637 CYP19A1P11511 503 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-209ENST00000560637 GIGYF2Q6Y7W6 1299 aaKnown RBP6.57□□□□□ -1.36
VPS13C-209ENST00000560637 RAB11FIP4Q86YS3 637 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 CCDC191Q8NCU4 936 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 LINC00116Q8NCU8 138 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 MAP3K15Q6ZN16 1313 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 REC8O95072 547 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 TDO2P48775 406 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 TRDNQ13061 729 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms