RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	IFT57	Q9NWB7	429 aa		18.28	■□□□□ 0.52
TPM1-223	ENST00000560445	IQCA1L	A6NCM1	817 aa		18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	HOXA10	P31260	410 aa	Predicted RBP	18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	PDIA6	Q15084	440 aa		18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	NUTM1	Q86Y26	1132 aa		18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	C7orf43	Q8WVR3	580 aa		18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	HYPK	Q9NX55	129 aa		18.27	■□□□□ 0.52
TPM1-223	ENST00000560445	ABCC12	Q96J65	1359 aa		18.27	■□□□□ 0.51
TPM1-223	ENST00000560445	WDR90	Q96KV7	1748 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	UBN2	Q6ZU65	1347 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	NTSR2	O95665	410 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	SUSD4	Q5VX71	490 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	COPS6	Q7L5N1	327 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	CRAMP1	Q96RY5	1269 aa		18.26	■□□□□ 0.51
TPM1-223	ENST00000560445	HSP90B1	P14625	803 aa	Known RBP	18.25	■□□□□ 0.51
TPM1-223	ENST00000560445	LRP10	Q7Z4F1	713 aa		18.25	■□□□□ 0.51
TPM1-223	ENST00000560445	XAGE3	Q8WTP9	111 aa		18.25	■□□□□ 0.51
TPM1-223	ENST00000560445	PSMD1	Q99460	953 aa		18.25	■□□□□ 0.51
TPM1-223	ENST00000560445	APAF1	O14727	1248 aa		18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	PRELP	P51888	382 aa		18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	AIMP1	Q12904	312 aa	Known RBP	18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	PLBD2	Q8NHP8	589 aa		18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	JDP2	Q8WYK2	163 aa		18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	NECTIN2	Q92692	538 aa		18.24	■□□□□ 0.51
TPM1-223	ENST00000560445	ANP32C	O43423	234 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	TCIRG1	Q13488	830 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	PROSER3	Q2NL68	480 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	SLC10A5	Q5PT55	438 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	DUSP27	Q5VZP5	1158 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	CHPF2	Q9P2E5	772 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	SH3TC1	Q8TE82	1336 aa		18.23	■□□□□ 0.51
TPM1-223	ENST00000560445	CEP350	Q5VT06	3117 aa		18.22	■□□□□ 0.51
TPM1-223	ENST00000560445	IARS	P41252	1262 aa	Known RBP	18.22	■□□□□ 0.51
TPM1-223	ENST00000560445	GOLGA2	Q08379	1002 aa		18.22	■□□□□ 0.51
TPM1-223	ENST00000560445	MBIP	Q9NS73	344 aa		18.22	■□□□□ 0.51
TPM1-223	ENST00000560445	ZNF316	A6NFI3	1004 aa	Predicted RBP	18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	PPEF1	O14829	653 aa	Predicted RBP	18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	NCBP3	Q53F19	620 aa	Known RBP	18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	ANKRD13D	Q6ZTN6	518 aa		18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	TMC4	Q7Z404	712 aa		18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	NLRP10	Q86W26	655 aa		18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	ZNF277	Q9NRM2	450 aa	Predicted RBP	18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	TRMT112	Q9UI30	125 aa	Known RBP	18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	SCN4A	P35499	1836 aa		18.21	■□□□□ 0.51
TPM1-223	ENST00000560445	ANXA1	P04083	346 aa		18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	ZNF853	P0CG23	659 aa		18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	SYNE4	Q8N205	404 aa		18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	SUPT20H	Q8NEM7	779 aa		18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	L3MBTL3	Q96JM7	780 aa	Predicted RBP	18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	VPS33B	Q9H267	617 aa		18.2	■□□□□ 0.5
TPM1-223	ENST00000560445	BBOX1	O75936	387 aa		18.19	■□□□□ 0.5
TPM1-223	ENST00000560445	DDX58	O95786	925 aa	Known RBP	18.19	■□□□□ 0.5
TPM1-223	ENST00000560445	CCDC27	Q2M243	656 aa		18.19	■□□□□ 0.5
TPM1-223	ENST00000560445	DDX46	Q7L014	1031 aa	Known RBP	18.19	■□□□□ 0.5
TPM1-223	ENST00000560445	EIF6	P56537	245 aa	Known RBP	18.18	■□□□□ 0.5
TPM1-223	ENST00000560445	KRT24	Q2M2I5	525 aa		18.18	■□□□□ 0.5
TPM1-223	ENST00000560445	CCDC30	Q5VVM6	783 aa		18.18	■□□□□ 0.5
TPM1-223	ENST00000560445	DDN	O94850	711 aa	Predicted RBP	18.17	■□□□□ 0.5
TPM1-223	ENST00000560445	GPC2	Q8N158	579 aa		18.17	■□□□□ 0.5
TPM1-223	ENST00000560445	MRS2	Q9HD23	443 aa		18.17	■□□□□ 0.5
TPM1-223	ENST00000560445	ATP6V0A2	Q9Y487	856 aa		18.17	■□□□□ 0.5
TPM1-223	ENST00000560445	TRIM28	Q13263	835 aa	Known RBP	18.16	■□□□□ 0.5
TPM1-223	ENST00000560445	CHADL	Q6NUI6	762 aa		18.16	■□□□□ 0.5
TPM1-223	ENST00000560445	RIC3	Q7Z5B4	369 aa		18.16	■□□□□ 0.5
TPM1-223	ENST00000560445	LARGE2	Q8N3Y3	721 aa		18.16	■□□□□ 0.5
TPM1-223	ENST00000560445	PNMA8A	Q86V59	439 aa	Predicted RBP	18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	LDHD	Q86WU2	507 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	NIM1K	Q8IY84	436 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	STK31	Q9BXU1	1019 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	HACL1	Q9UJ83	578 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	ABCC4	O15439	1325 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	IL16	Q14005	1332 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	SNED1	Q8TER0	1413 aa		18.15	■□□□□ 0.5
TPM1-223	ENST00000560445	FZD9	O00144	591 aa		18.14	■□□□□ 0.49
TPM1-223	ENST00000560445	LMOD1	P29536	600 aa	Predicted RBP	18.14	■□□□□ 0.49
TPM1-223	ENST00000560445	GRAP	Q13588	217 aa		18.14	■□□□□ 0.49
TPM1-223	ENST00000560445	GRAPL	Q8TC17	118 aa	Predicted RBP	18.14	■□□□□ 0.49
TPM1-223	ENST00000560445	ISCA1	Q9BUE6	129 aa		18.14	■□□□□ 0.49
TPM1-223	ENST00000560445	DPP8	Q6V1X1	898 aa	Predicted RBP	18.13	■□□□□ 0.49
TPM1-223	ENST00000560445	SP8	Q8IXZ3	490 aa		18.13	■□□□□ 0.49
TPM1-223	ENST00000560445	POTEC	B2RU33	542 aa		18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	PPIP5K2	O43314	1243 aa		18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	HCLS1	P14317	486 aa	Predicted RBP	18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	OLFM4	Q6UX06	510 aa		18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	KLRG1	Q96E93	195 aa		18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	TAF1D	Q9H5J8	278 aa	Predicted RBP	18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	LAMB2	P55268	1798 aa		18.12	■□□□□ 0.49
TPM1-223	ENST00000560445	MPND	Q8N594	471 aa		18.11	■□□□□ 0.49
TPM1-223	ENST00000560445	CCDC191	Q8NCU4	936 aa		18.11	■□□□□ 0.49
TPM1-223	ENST00000560445	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.11	■□□□□ 0.49
TPM1-223	ENST00000560445	ZNF541	Q9H0D2	1346 aa		18.11	■□□□□ 0.49
TPM1-223	ENST00000560445	ELL2	O00472	640 aa	Predicted RBP	18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	TCERG1	O14776	1098 aa	Known RBP	18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	NEXN	Q0ZGT2	675 aa		18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	SF3B3	Q15393	1217 aa	Known RBP	18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	C3orf67	Q6ZVT6	689 aa		18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	WWC1	Q8IX03	1113 aa		18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	DNAJC5G	Q8N7S2	189 aa		18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.1	■□□□□ 0.49
TPM1-223	ENST00000560445	ATP5J2-PTCD1	G3V325	749 aa		18.09	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms