RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 UPF3BQ9BZI7 483 aaKnown RBP17.15■□□□□ 0.34
CARMIL3-203ENST00000560349 EP400Q96L91 3159 aa17.15■□□□□ 0.34
CARMIL3-203ENST00000560349 PHLPP1O60346 1717 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 CHMP5Q9NZZ3 219 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 ZBTB1Q9Y2K1 713 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 ERBB4Q15303 1308 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 FOXO4P98177 505 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 HLFQ16534 295 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 FAM89AQ96GI7 184 aa17.14■□□□□ 0.33
CARMIL3-203ENST00000560349 NEK4P51957 841 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 DDB1Q16531 1140 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 ITGB4P16144 1822 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 BCL9O00512 1426 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 SPATA31A1Q5TZJ5 1347 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 TTC41PQ6P2S7 1318 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 CHGBP05060 677 aa17.13■□□□□ 0.33
CARMIL3-203ENST00000560349 H7C1W4 665 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 RABL6Q3YEC7 729 aaPredicted RBP17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 GPATCH3Q96I76 525 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 AK9Q5TCS8 1911 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 UBAP1LF5GYI3 381 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 DIAPH3Q9NSV4 1193 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 DBNLQ9UJU6 430 aaKnown RBP17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 TBC1D2BQ9UPU7 963 aa17.12■□□□□ 0.33
CARMIL3-203ENST00000560349 STARD3NLO95772 234 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 FAM227BQ96M60 508 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 C8orf37Q96NL8 207 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 COPRSQ9NQ92 184 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 USP42Q9H9J4 1324 aaKnown RBP17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 PLCH1Q4KWH8 1693 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 SGSM2O43147 1006 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 LRRC24Q50LG9 513 aa17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 MARCH10Q8NA82 808 aaPredicted RBP17.11■□□□□ 0.33
CARMIL3-203ENST00000560349 COL22A1Q8NFW1 1626 aaPredicted RBP17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 DDIT3P35638 169 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 KIF6Q6ZMV9 814 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 ZGPATQ8N5A5 531 aaKnown RBP17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 DBNDD2Q9BQY9 259 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 CYP19A1P11511 503 aaPredicted RBP17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 TNNI3KQ59H18 835 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 NUP188Q5SRE5 1749 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 LARP6Q9BRS8 491 aaKnown RBP17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 PUS3Q9BZE2 481 aaKnown RBP17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 FPGT-TNNI3KV9GXZ4 949 aa17.1■□□□□ 0.33
CARMIL3-203ENST00000560349 TOM1O60784 492 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 KCNQ4P56696 695 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 FAM98CQ17RN3 349 aaKnown RBP17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 CCDC191Q8NCU4 936 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 FAM177BA6PVY3 158 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 KCNQ2O43526 872 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 ST18O60284 1047 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 PTH1RQ03431 593 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 TCIRG1Q13488 830 aa17.09■□□□□ 0.33
CARMIL3-203ENST00000560349 CPA1P15085 419 aa17.08■□□□□ 0.33
CARMIL3-203ENST00000560349 PKP1Q13835 747 aa17.08■□□□□ 0.33
CARMIL3-203ENST00000560349 NEUROD6Q96NK8 337 aa17.08■□□□□ 0.33
CARMIL3-203ENST00000560349 DNAJC2Q99543 621 aaKnown RBP17.08■□□□□ 0.33
CARMIL3-203ENST00000560349 DTNBO60941 627 aa17.08■□□□□ 0.32
CARMIL3-203ENST00000560349 MCCP23508 829 aa17.08■□□□□ 0.32
CARMIL3-203ENST00000560349 TIMM10P62072 90 aa17.08■□□□□ 0.32
CARMIL3-203ENST00000560349 FSD1Q9BTV5 496 aa17.08■□□□□ 0.32
CARMIL3-203ENST00000560349 TJP1Q07157 1748 aa17.08■□□□□ 0.32
CARMIL3-203ENST00000560349 RASEFQ8IZ41 740 aa17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 TNPO1Q92973 898 aaKnown RBP17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 ISCA1Q9BUE6 129 aa17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 LSG1Q9H089 658 aaKnown RBP17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 SSFA2P28290 1259 aa17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 ATG9AQ7Z3C6 839 aa17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 DOT1LQ8TEK3 1739 aa17.07■□□□□ 0.32
CARMIL3-203ENST00000560349 NMIQ13287 307 aaPredicted RBP17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 FAM182BQ5T319 152 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 VSIG10Q8N0Z9 540 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 PODXL2Q9NZ53 605 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 RAD50Q92878 1312 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 A0A0D9SFI3 127 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 MCM4P33991 863 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 SLFNL1Q499Z3 407 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 EVI5LQ96CN4 794 aa17.06■□□□□ 0.32
CARMIL3-203ENST00000560349 KIAA1211Q6ZU35 1233 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 NGLY1Q96IV0 654 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 TEX13AQ9BXU3 409 aaPredicted RBP17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 GZF1Q9H116 711 aaPredicted RBP17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 SPATA31A5Q5VU36 1347 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 MAP3K15Q6ZN16 1313 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 SPATA31A7Q8IWB4 1347 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 FOXD4L5Q5VV16 416 aaPredicted RBP17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 SMIM5Q71RC9 77 aa17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 DDX46Q7L014 1031 aaKnown RBP17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 FOXD4L4Q8WXT5 416 aaPredicted RBP17.05■□□□□ 0.32
CARMIL3-203ENST00000560349 HSPA4P34932 840 aa17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 ATP6V1AP38606 617 aa17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 PTF1AQ7RTS3 328 aa17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 COL9A3Q14050 684 aaPredicted RBP17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 GIGYF2Q6Y7W6 1299 aaKnown RBP17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 PRPF40BQ6NWY9 871 aaKnown RBP17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 DZIP3Q86Y13 1208 aaKnown RBP17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 CHAMP1Q96JM3 812 aa17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 SNX14Q9Y5W7 946 aa17.04■□□□□ 0.32
CARMIL3-203ENST00000560349 ZNF589Q86UQ0 364 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms