RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TUBGCP6Q96RT7 1819 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 F6X3S4 739 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 RGL2O15211 777 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 C3orf67Q6ZVT6 689 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 TRMT2AQ8IZ69 625 aaKnown RBP10.94□□□□□ -0.66
USP3-217ENST00000560070 TTLL6Q8N841 843 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 ISCA1Q9BUE6 129 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 METTL22Q9BUU2 404 aaPredicted RBP10.94□□□□□ -0.66
USP3-217ENST00000560070 DLG5Q8TDM6 1919 aa10.94□□□□□ -0.66
USP3-217ENST00000560070 C21orf2O43822 256 aa10.93□□□□□ -0.66
USP3-217ENST00000560070 SRGNP10124 158 aa10.93□□□□□ -0.66
USP3-217ENST00000560070 SLC4A10Q6U841 1118 aa10.93□□□□□ -0.66
USP3-217ENST00000560070 MRPL50Q8N5N7 158 aaKnown RBP10.93□□□□□ -0.66
USP3-217ENST00000560070 SSH1Q8WYL5 1049 aa10.93□□□□□ -0.66
USP3-217ENST00000560070 PXDNLA1KZ92 1463 aa10.93□□□□□ -0.66
USP3-217ENST00000560070 NPR1P16066 1061 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 YY1P25490 414 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 NEXNQ0ZGT2 675 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 CWF19L2Q2TBE0 894 aaKnown RBP10.92□□□□□ -0.66
USP3-217ENST00000560070 MASTLQ96GX5 879 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 NLRP3Q96P20 1036 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 KDM3BQ7LBC6 1761 aa10.92□□□□□ -0.66
USP3-217ENST00000560070 IGKV5-2P06315 115 aa10.91□□□□□ -0.66
USP3-217ENST00000560070 STYK1Q6J9G0 422 aa10.91□□□□□ -0.66
USP3-217ENST00000560070 DNAAF4Q8WXU2 420 aa10.91□□□□□ -0.66
USP3-217ENST00000560070 RPGRQ92834 1020 aaKnown RBP10.91□□□□□ -0.66
USP3-217ENST00000560070 CNKSR1Q969H4 720 aa10.91□□□□□ -0.66
USP3-217ENST00000560070 YTHDC1Q96MU7 727 aaKnown RBP10.91□□□□□ -0.66
USP3-217ENST00000560070 CCDC85AQ96PX6 553 aaPredicted RBP10.91□□□□□ -0.66
USP3-217ENST00000560070 SMC4Q9NTJ3 1288 aa10.91□□□□□ -0.66
USP3-217ENST00000560070 CWC25Q9NXE8 425 aaPredicted RBP10.91□□□□□ -0.66
USP3-217ENST00000560070 ABCC12Q96J65 1359 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 SH3TC1Q8TE82 1336 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 QSER1Q2KHR3 1735 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 KLRG2A4D1S0 409 aaPredicted RBP10.9□□□□□ -0.66
USP3-217ENST00000560070 IRS4O14654 1257 aaPredicted RBP10.9□□□□□ -0.66
USP3-217ENST00000560070 TRIM28Q13263 835 aaKnown RBP10.9□□□□□ -0.66
USP3-217ENST00000560070 SLC10A5Q5PT55 438 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 OLFM4Q6UX06 510 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 CCDC191Q8NCU4 936 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 RBM17Q96I25 401 aaKnown RBP10.9□□□□□ -0.66
USP3-217ENST00000560070 PDZRN3Q9UPQ7 1066 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 ATP10DQ9P241 1426 aa10.9□□□□□ -0.66
USP3-217ENST00000560070 ADCY9O60503 1353 aa10.9□□□□□ -0.67
USP3-217ENST00000560070 ALDH1B1P30837 517 aa10.89□□□□□ -0.67
USP3-217ENST00000560070 RASSF7Q02833 373 aa10.89□□□□□ -0.67
USP3-217ENST00000560070 PRPF40BQ6NWY9 871 aaKnown RBP10.89□□□□□ -0.67
USP3-217ENST00000560070 SLC51AQ86UW1 340 aa10.89□□□□□ -0.67
USP3-217ENST00000560070 ZBTB38Q8NAP3 1195 aaPredicted RBP10.89□□□□□ -0.67
USP3-217ENST00000560070 NOB1Q9ULX3 412 aaKnown RBP10.89□□□□□ -0.67
USP3-217ENST00000560070 C4AP0C0L4 1744 aa10.89□□□□□ -0.67
USP3-217ENST00000560070 NEURL1BA8MQ27 555 aa10.88□□□□□ -0.67
USP3-217ENST00000560070 PCCAP05165 728 aaPredicted RBP10.88□□□□□ -0.67
USP3-217ENST00000560070 RARSP54136 660 aaKnown RBP10.88□□□□□ -0.67
USP3-217ENST00000560070 DDX46Q7L014 1031 aaKnown RBP10.88□□□□□ -0.67
USP3-217ENST00000560070 BCAR3O75815 825 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 GCKRQ14397 625 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 ALDH1L2Q3SY69 923 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 CRY2Q49AN0 593 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 BEND3Q5T5X7 828 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 C9orf131Q5VYM1 1079 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 UBE3BQ7Z3V4 1068 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 LINS1Q8NG48 757 aa10.87□□□□□ -0.67
USP3-217ENST00000560070 ZNF526Q8TF50 670 aaPredicted RBP10.87□□□□□ -0.67
USP3-217ENST00000560070 FRAT1Q92837 279 aaPredicted RBP10.87□□□□□ -0.67
USP3-217ENST00000560070 H7C1W4 665 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 C7orf43Q8WVR3 580 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 CRAMP1Q96RY5 1269 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 SRCIN1Q9C0H9 1055 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 SEC31BQ9NQW1 1179 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 RNF181Q9P0P0 153 aa10.86□□□□□ -0.67
USP3-217ENST00000560070 VIRMAQ69YN4 1812 aaKnown RBP10.86□□□□□ -0.67
USP3-217ENST00000560070 ZBED9Q6R2W3 1325 aa10.85□□□□□ -0.67
USP3-217ENST00000560070 PPEF1O14829 653 aaPredicted RBP10.85□□□□□ -0.67
USP3-217ENST00000560070 PDE8AO60658 829 aa10.85□□□□□ -0.67
USP3-217ENST00000560070 HOXA10P31260 410 aaPredicted RBP10.85□□□□□ -0.67
USP3-217ENST00000560070 C9orf78Q9NZ63 289 aaPredicted RBP10.85□□□□□ -0.67
USP3-217ENST00000560070 RNF123Q5XPI4 1314 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 NFKBIEO00221 500 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 CT47B1P0C2W7 299 aaPredicted RBP10.84□□□□□ -0.67
USP3-217ENST00000560070 PRELPP51888 382 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 SF3B3Q15393 1217 aaKnown RBP10.84□□□□□ -0.67
USP3-217ENST00000560070 CCDC93Q567U6 631 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 CELF1Q92879 486 aaKnown RBP10.84□□□□□ -0.67
USP3-217ENST00000560070 TMX4Q9H1E5 349 aaPredicted RBP10.84□□□□□ -0.67
USP3-217ENST00000560070 TNNQ9UQP3 1299 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 IBTKQ9P2D0 1353 aaPredicted RBP10.84□□□□□ -0.67
USP3-217ENST00000560070 ABCC4O15439 1325 aa10.84□□□□□ -0.67
USP3-217ENST00000560070 BBOX1O75936 387 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 HSP90B1P14625 803 aaKnown RBP10.83□□□□□ -0.68
USP3-217ENST00000560070 GRAPQ13588 217 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 CCDC152Q4G0S7 254 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 GRAPLQ8TC17 118 aaPredicted RBP10.83□□□□□ -0.68
USP3-217ENST00000560070 CLUAP1Q96AJ1 413 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 ZNF277Q9NRM2 450 aaPredicted RBP10.83□□□□□ -0.68
USP3-217ENST00000560070 CHMP3Q9Y3E7 222 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 PTPRCP08575 1304 aa10.83□□□□□ -0.68
USP3-217ENST00000560070 COL24A1Q17RW2 1714 aa10.82□□□□□ -0.68
USP3-217ENST00000560070 ALDH1L1O75891 902 aa10.82□□□□□ -0.68
USP3-217ENST00000560070 CTSWP56202 376 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 296.2 ms