RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 USP16Q9Y5T5 823 aa9.78□□□□□ -0.84
SMAD3-212ENST00000559937 AACSQ86V21 672 aa9.77□□□□□ -0.85
SMAD3-212ENST00000559937 BRPF3Q9ULD4 1205 aa9.77□□□□□ -0.85
SMAD3-212ENST00000559937 PA2G4Q9UQ80 394 aaKnown RBP9.77□□□□□ -0.85
SMAD3-212ENST00000559937 SNX14Q9Y5W7 946 aa9.77□□□□□ -0.85
SMAD3-212ENST00000559937 MYH3P11055 1940 aa9.77□□□□□ -0.85
SMAD3-212ENST00000559937 BRD1O95696 1058 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 IL2RBP14784 551 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 RFX5P48382 616 aaPredicted RBP9.76□□□□□ -0.85
SMAD3-212ENST00000559937 CASP7P55210 303 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 TOM1L2Q6ZVM7 507 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 ZGPATQ8N5A5 531 aaKnown RBP9.76□□□□□ -0.85
SMAD3-212ENST00000559937 EAF2Q96CJ1 260 aaPredicted RBP9.76□□□□□ -0.85
SMAD3-212ENST00000559937 TTC14Q96N46 770 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 IL25Q9H293 177 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.76□□□□□ -0.85
SMAD3-212ENST00000559937 TCHHQ07283 1943 aa9.76□□□□□ -0.85
SMAD3-212ENST00000559937 AHDC1Q5TGY3 1603 aaPredicted RBP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 H7C1W4 665 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 MAP4K4O95819 1239 aaPredicted RBP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 XRCC6P12956 609 aaKnown RBP eCLIP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 POTEAQ6S8J7 498 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 ZSCAN31Q96LW9 406 aaPredicted RBP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 GZF1Q9H116 711 aaPredicted RBP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 LMBRD1Q9NUN5 540 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 ZDHHC9Q9Y397 364 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 DDX49Q9Y6V7 483 aaKnown RBP9.75□□□□□ -0.85
SMAD3-212ENST00000559937 MYH7P12883 1935 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 CCDC171Q6TFL3 1326 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 MED23Q9ULK4 1368 aa9.75□□□□□ -0.85
SMAD3-212ENST00000559937 COL16A1Q07092 1604 aaPredicted RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 PHLPP1O60346 1717 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 PDIA4P13667 645 aaKnown RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 ATP5JP18859 108 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 ZNF445P59923 1031 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 PTPN12Q05209 780 aaKnown RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 EPHA10Q5JZY3 1008 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 MCTP1Q6DN14 999 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 CWC27Q6UX04 472 aaKnown RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 FAM43AQ8N2R8 423 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 GRPEL1Q9HAV7 217 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 GPR108Q9NPR9 543 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 LIMCH1Q9UPQ0 1083 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 LAMA4Q16363 1823 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 SPATA31A6Q5VVP1 1343 aa9.74□□□□□ -0.85
SMAD3-212ENST00000559937 WDR33Q9C0J8 1336 aaKnown RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 CICQ96RK0 1608 aaPredicted RBP9.74□□□□□ -0.85
SMAD3-212ENST00000559937 A0A087WZG4 1122 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NBPF26B4DH59 902 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 MBD3O95983 291 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 ZKSCAN1P17029 563 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NECTIN1Q15223 517 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 TNNI3KQ59H18 835 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NBPF14Q5TI25 921 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 VPS53Q5VIR6 699 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NBPF10Q6P3W6 841 aaKnown RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 UBE3BQ7Z3V4 1068 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 VSIG10Q8N0Z9 540 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NBPF15Q8N660 670 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 CCDC191Q8NCU4 936 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 MAP4K1Q92918 833 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 TEX13AQ9BXU3 409 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 UPF3BQ9BZI7 483 aaKnown RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 CCDC8Q9H0W5 538 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 ALDH8A1Q9H2A2 487 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 ZSWIM6Q9HCJ5 1215 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 SH2B1Q9NRF2 756 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 ATG3Q9NT62 314 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 CWC25Q9NXE8 425 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 FPGT-TNNI3KV9GXZ4 949 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 RPAP1Q9BWH6 1393 aaPredicted RBP9.73□□□□□ -0.85
SMAD3-212ENST00000559937 DISP2A7MBM2 1401 aa9.73□□□□□ -0.85
SMAD3-212ENST00000559937 NUP98P52948 1817 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 PSMA5P28066 241 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 NMIQ13287 307 aaPredicted RBP9.72□□□□□ -0.85
SMAD3-212ENST00000559937 PKP1Q13835 747 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 TSGA10IPQ3SY00 556 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 RNF20Q5VTR2 975 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 RASEFQ8IZ41 740 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 KLHL34Q8N239 644 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 HMG20BQ9P0W2 317 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 FBXO3Q9UK99 471 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 PALLDQ8WX93 1383 aa9.72□□□□□ -0.85
SMAD3-212ENST00000559937 AK2P54819 239 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 FOXO4P98177 505 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 PTH1RQ03431 593 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 TRIM28Q13263 835 aaKnown RBP9.71□□□□□ -0.86
SMAD3-212ENST00000559937 FSD1Q9BTV5 496 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 SIL1Q9H173 461 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 RBM8AQ9Y5S9 174 aaKnown RBP9.71□□□□□ -0.86
SMAD3-212ENST00000559937 CYP46A1Q9Y6A2 500 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 ZNF609O15014 1411 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 RREB1Q92766 1687 aa9.71□□□□□ -0.86
SMAD3-212ENST00000559937 NRAPQ86VF7 1730 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 DOT1LQ8TEK3 1739 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 ARAP2Q8WZ64 1704 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 MYH15Q9Y2K3 1946 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 CIAO1O76071 339 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 CASTP20810 708 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms