RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 EDC3Q96F86 508 aaKnown RBP12.08□□□□□ -0.48
LRRC28-216ENST00000559819 RBM8AQ9Y5S9 174 aaKnown RBP12.08□□□□□ -0.48
LRRC28-216ENST00000559819 A0A0D9SFI3 127 aa12.08□□□□□ -0.48
LRRC28-216ENST00000559819 SYT1P21579 422 aa12.08□□□□□ -0.48
LRRC28-216ENST00000559819 ST3GAL1Q11201 340 aa12.08□□□□□ -0.48
LRRC28-216ENST00000559819 SMC3Q9UQE7 1217 aa12.08□□□□□ -0.48
LRRC28-216ENST00000559819 HDAC5Q9UQL6 1122 aa12.08□□□□□ -0.48
LRRC28-216ENST00000559819 CYP27B1O15528 508 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 ZSCAN22P10073 491 aaPredicted RBP12.07□□□□□ -0.48
LRRC28-216ENST00000559819 NEXNQ0ZGT2 675 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 NECTIN1Q15223 517 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 CREB3L3Q68CJ9 461 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 METTL22Q9BUU2 404 aaPredicted RBP12.07□□□□□ -0.48
LRRC28-216ENST00000559819 TAF6LQ9Y6J9 622 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 ALS2Q96Q42 1657 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 STX6O43752 255 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 KCNJ4P48050 445 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 LRP10Q7Z4F1 713 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 IFNL2Q8IZJ0 200 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 NECAB1Q8N987 351 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 FSD1Q9BTV5 496 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 ZSWIM6Q9HCJ5 1215 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 NDUFB9Q9Y6M9 179 aa12.07□□□□□ -0.48
LRRC28-216ENST00000559819 KIF1AQ12756 1690 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 ATP5J2-PTCD1G3V325 749 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 PTCD1O75127 700 aaKnown RBP12.06□□□□□ -0.48
LRRC28-216ENST00000559819 ATF3P18847 181 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 GJB2P29033 226 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 TCEANC2Q96MN5 208 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.06□□□□□ -0.48
LRRC28-216ENST00000559819 VPS53Q5VIR6 699 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 KCNB2Q92953 911 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 CYP46A1Q9Y6A2 500 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 TMEM94Q12767 1356 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 MST1RQ04912 1400 aa12.06□□□□□ -0.48
LRRC28-216ENST00000559819 SLC27A2O14975 620 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 CHGBP05060 677 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 ME3Q16798 604 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 ANKRD13DQ6ZTN6 518 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 ZNF589Q86UQ0 364 aaPredicted RBP12.05□□□□□ -0.48
LRRC28-216ENST00000559819 ZSCAN30Q86W11 494 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 TTC5Q8N0Z6 440 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 LMTK3Q96Q04 1460 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 SCN11AQ9UI33 1791 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 FIBPO43427 364 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 F13A1P00488 732 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 UBE3BQ7Z3V4 1068 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 PDLIM2Q96JY6 352 aa12.05□□□□□ -0.48
LRRC28-216ENST00000559819 SNRPA1P09661 255 aaKnown RBP12.04□□□□□ -0.48
LRRC28-216ENST00000559819 TFCP2Q12800 502 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 MAP4K1Q92918 833 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 TSPY26PQ9H489 355 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 TPCN1Q9ULQ1 816 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 CCDC9Q9Y3X0 531 aaKnown RBP12.04□□□□□ -0.48
LRRC28-216ENST00000559819 RFX5P48382 616 aaPredicted RBP12.04□□□□□ -0.48
LRRC28-216ENST00000559819 TM6SF1Q9BZW5 370 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 MTMR6Q9Y217 621 aa12.04□□□□□ -0.48
LRRC28-216ENST00000559819 ZKSCAN1P17029 563 aaPredicted RBP12.03□□□□□ -0.48
LRRC28-216ENST00000559819 PTPN12Q05209 780 aaKnown RBP12.03□□□□□ -0.48
LRRC28-216ENST00000559819 DBNLQ9UJU6 430 aaKnown RBP12.03□□□□□ -0.48
LRRC28-216ENST00000559819 CABP4P57796 275 aa12.03□□□□□ -0.48
LRRC28-216ENST00000559819 TMEM87AQ8NBN3 555 aa12.03□□□□□ -0.48
LRRC28-216ENST00000559819 DCAF5Q96JK2 942 aa12.03□□□□□ -0.48
LRRC28-216ENST00000559819 FMNL2Q96PY5 1086 aa12.03□□□□□ -0.48
LRRC28-216ENST00000559819 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.03□□□□□ -0.48
LRRC28-216ENST00000559819 COL18A1P39060 1754 aa12.03□□□□□ -0.48
LRRC28-216ENST00000559819 VPS37CA5D8V6 355 aaPredicted RBP12.02□□□□□ -0.48
LRRC28-216ENST00000559819 HIP1O00291 1037 aa12.02□□□□□ -0.48
LRRC28-216ENST00000559819 DNM1Q05193 864 aaKnown RBP12.02□□□□□ -0.48
LRRC28-216ENST00000559819 TNNI3KQ59H18 835 aa12.02□□□□□ -0.48
LRRC28-216ENST00000559819 SYAP1Q96A49 352 aaPredicted RBP12.02□□□□□ -0.48
LRRC28-216ENST00000559819 FPGT-TNNI3KV9GXZ4 949 aa12.02□□□□□ -0.48
LRRC28-216ENST00000559819 MED23Q9ULK4 1368 aa12.02□□□□□ -0.48
LRRC28-216ENST00000559819 TCHHQ07283 1943 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 A0A087WZG4 1122 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 MSNP26038 577 aaKnown RBP12.02□□□□□ -0.49
LRRC28-216ENST00000559819 CCDC129Q6ZRS4 1044 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 ZSCAN31Q96LW9 406 aaPredicted RBP12.02□□□□□ -0.49
LRRC28-216ENST00000559819 COPRSQ9NQ92 184 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 COL15A1P39059 1388 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 MRC1P22897 1456 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 DBNDD2Q9BQY9 259 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 SNRKQ9NRH2 765 aa12.02□□□□□ -0.49
LRRC28-216ENST00000559819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.02□□□□□ -0.49
LRRC28-216ENST00000559819 DNAJC2Q99543 621 aaKnown RBP12.01□□□□□ -0.49
LRRC28-216ENST00000559819 SH2B1Q9NRF2 756 aaPredicted RBP12.01□□□□□ -0.49
LRRC28-216ENST00000559819 SEC62Q99442 399 aaKnown RBP12.01□□□□□ -0.49
LRRC28-216ENST00000559819 CHMP3Q9Y3E7 222 aa12.01□□□□□ -0.49
LRRC28-216ENST00000559819 TNS3Q68CZ2 1445 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 NBPF26B4DH59 902 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 STK3Q13188 491 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 CCDC183Q5T5S1 534 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 NBPF14Q5TI25 921 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 NBPF10Q6P3W6 841 aaKnown RBP12□□□□□ -0.49
LRRC28-216ENST00000559819 BLOC1S2Q6QNY1 142 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 NBPF15Q8N660 670 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 TAF5LO75529 589 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 RPS6KB1P23443 525 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 CASP7P55210 303 aa12□□□□□ -0.49
LRRC28-216ENST00000559819 UBE2HP62256 183 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms