RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 KIF24Q5T7B8 1368 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 SH3TC1Q8TE82 1336 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 KDM4AO75164 1064 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 FOSBP53539 338 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 RBM10P98175 930 aaKnown RBP12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 CNBD1Q8NA66 436 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 GRPEL1Q9HAV7 217 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 TNS3Q68CZ2 1445 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 MAP3K12Q12852 859 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 TMOD2Q9NZR1 351 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 GOLGA6L6A8MZA4 724 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 SMC3Q9UQE7 1217 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 GOLIM4O00461 696 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 ATP2B3Q16720 1220 aa12.69□□□□□ -0.38
CARMIL3-202ENST00000559694 JCADQ9P266 1359 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 TULP4Q9NRJ4 1543 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 CYP27B1O15528 508 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 VPS37CA5D8V6 355 aaPredicted RBP12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 NRDCO43847 1150 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 CSPP1Q1MSJ5 1256 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 PARP10Q53GL7 1025 aa12.68□□□□□ -0.38
CARMIL3-202ENST00000559694 IL15P40933 162 aaPredicted RBP12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 SPATA31D1Q6ZQQ2 1576 aa12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 QRICH2Q9H0J4 1663 aa12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 CCDC191Q8NCU4 936 aa12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 MAP7D2Q96T17 732 aa12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 BICC1Q9H694 974 aaKnown RBP12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 THRAP3Q9Y2W1 955 aaKnown RBP12.67□□□□□ -0.38
CARMIL3-202ENST00000559694 MINDY4BA8MYZ0 360 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 USP5P45974 858 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 PIGBQ92521 554 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 ZC3H12CQ9C0D7 883 aaKnown RBP12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 CTNNA3Q9UI47 895 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 CWC22Q9HCG8 908 aaKnown RBP12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 MROH2AA6NES4 1674 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 PREX1Q8TCU6 1659 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 ZBTB40Q9NUA8 1239 aa12.66□□□□□ -0.38
CARMIL3-202ENST00000559694 CLSTN1O94985 981 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 MSL1Q68DK7 614 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 NBPF7P0C2Y1 421 aaPredicted RBP12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 CCDC34Q96HJ3 373 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 GJD4Q96KN9 370 aaPredicted RBP12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 PPLO60437 1756 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 PRAMEF22A3QJZ6 481 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 CEP85Q6P2H3 762 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 ZBTB1Q9Y2K1 713 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 ATP6V1DQ9Y5K8 247 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 CYP46A1Q9Y6A2 500 aa12.65□□□□□ -0.38
CARMIL3-202ENST00000559694 A0A0U1RQG5 324 aaPredicted RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 TCIRG1Q13488 830 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 HDAC1Q13547 482 aaPredicted RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 ZBTB7BO15156 539 aaPredicted RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 CRKLP46109 303 aaKnown RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 NUCB2P80303 420 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 GCKRQ14397 625 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 KLHDC4Q8TBB5 520 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 RBM6P78332 1123 aaKnown RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 CCDC173Q0VFZ6 552 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 BLOC1S2Q6QNY1 142 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 C16orf71Q8IYS4 520 aaPredicted RBP12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 NAPBQ9H115 298 aa12.64□□□□□ -0.39
CARMIL3-202ENST00000559694 SAFBQ15424 915 aaKnown RBP eCLIP12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 USP31Q70CQ4 1352 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 PROSER3Q2NL68 480 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 CAVIN1Q6NZI2 390 aaKnown RBP12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 RICTORQ6R327 1708 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 RIMBP2O15034 1052 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 UQCRFS1P1P0C7P4 283 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 RNF214Q8ND24 703 aa12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 JAKMIP1Q96N16 626 aaKnown RBP12.63□□□□□ -0.39
CARMIL3-202ENST00000559694 CPSF1Q10570 1443 aaKnown RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 F8W031 263 aaPredicted RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 PDE8AO60658 829 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 ITGA6P23229 1130 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 STK3Q13188 491 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 NUP133Q8WUM0 1156 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 ZMYND15Q9H091 742 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 CDK12Q9NYV4 1490 aaPredicted RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 LDHCP07864 332 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 RABEP1Q15276 862 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 IMMTQ16891 758 aaKnown RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 CRACR2BQ8N4Y2 399 aaPredicted RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 EVI5LQ96CN4 794 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 ZNF594Q96JF6 807 aaPredicted RBP12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 UBAC1Q9BSL1 405 aa12.62□□□□□ -0.39
CARMIL3-202ENST00000559694 TIMM10P62072 90 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 USPL1Q5W0Q7 1092 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 MTERF4Q7Z6M4 381 aaKnown RBP12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 MYO3AQ8NEV4 1616 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 SOS2Q07890 1332 aaPredicted RBP12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 TFCP2Q12800 502 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 MKNK2Q9HBH9 465 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 CDC42BPGQ6DT37 1551 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 ATP2B1P20020 1258 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 TTF1Q15361 905 aaPredicted RBP12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 SLF2Q8IX21 1173 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 DCTPP1Q9H773 170 aa12.61□□□□□ -0.39
CARMIL3-202ENST00000559694 ADGRB1O14514 1584 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms