RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 BCL2L12Q9HB09 334 aa21.63■■□□□ 1.05
CHRNA3-206ENST00000559658 EXOC6BQ9Y2D4 811 aa21.63■■□□□ 1.05
CHRNA3-206ENST00000559658 PDE4AP27815 886 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 ZNF34Q8IZ26 560 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 AK7Q96M32 723 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 TRIM28Q13263 835 aaKnown RBP21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 POLA2Q14181 598 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 SSH3Q8TE77 659 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 FAM89AQ96GI7 184 aa21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 RTCBQ9Y3I0 505 aaKnown RBP21.62■■□□□ 1.05
CHRNA3-206ENST00000559658 PLSCR1O15162 318 aa21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 ZNF827Q17R98 1081 aa21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 USPL1Q5W0Q7 1092 aa21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 ARHGEF1Q92888 912 aaKnown RBP21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 LNPKQ9C0E8 428 aa21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 BCL11AQ9H165 835 aa21.61■■□□□ 1.05
CHRNA3-206ENST00000559658 FAM177BA6PVY3 158 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 NUCB1Q02818 461 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 MTX1Q13505 466 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 GCC1Q96CN9 775 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 SMARCA5O60264 1052 aaPredicted RBP21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 HMMRO75330 724 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 HSP90AB3PQ58FF7 597 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 ANKRD45Q5TZF3 282 aa21.6■■□□□ 1.05
CHRNA3-206ENST00000559658 FOXO4P98177 505 aa21.59■■□□□ 1.05
CHRNA3-206ENST00000559658 KLHDC4Q8TBB5 520 aa21.59■■□□□ 1.05
CHRNA3-206ENST00000559658 PA2G4Q9UQ80 394 aaKnown RBP21.59■■□□□ 1.05
CHRNA3-206ENST00000559658 DDX60Q8IY21 1712 aaKnown RBP21.59■■□□□ 1.05
CHRNA3-206ENST00000559658 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.58■■□□□ 1.05
CHRNA3-206ENST00000559658 SUSD4Q5VX71 490 aa21.58■■□□□ 1.05
CHRNA3-206ENST00000559658 NARFQ9UHQ1 456 aa21.58■■□□□ 1.05
CHRNA3-206ENST00000559658 COL24A1Q17RW2 1714 aa21.58■■□□□ 1.05
CHRNA3-206ENST00000559658 CHD1LQ86WJ1 897 aa21.58■■□□□ 1.04
CHRNA3-206ENST00000559658 NIP7Q9Y221 180 aaKnown RBP eCLIP21.58■■□□□ 1.04
CHRNA3-206ENST00000559658 CASZ1Q86V15 1759 aa21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 PCCAP05165 728 aaPredicted RBP21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 RABL6Q3YEC7 729 aaPredicted RBP21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 ZBTB38Q8NAP3 1195 aaPredicted RBP21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 MYH3P11055 1940 aa21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 USP42Q9H9J4 1324 aaKnown RBP21.57■■□□□ 1.04
CHRNA3-206ENST00000559658 EN1Q05925 392 aaPredicted RBP21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 TBC1D9BQ66K14 1250 aa21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 BICDL1Q6ZP65 573 aa21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 EZH2Q15910 746 aaKnown RBP21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 LMBR1LQ6UX01 489 aa21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 TRMT112Q9UI30 125 aaKnown RBP21.56■■□□□ 1.04
CHRNA3-206ENST00000559658 LAMB2P55268 1798 aa21.55■■□□□ 1.04
CHRNA3-206ENST00000559658 OTUD7AQ8TE49 926 aaPredicted RBP21.55■■□□□ 1.04
CHRNA3-206ENST00000559658 TRAPPC3LQ5T215 181 aa21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 C16orf71Q8IYS4 520 aaPredicted RBP21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 CCDC85AQ96PX6 553 aaPredicted RBP21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 SURF6O75683 361 aaKnown RBP21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 NTSR2O95665 410 aa21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 RFX5P48382 616 aaPredicted RBP21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 NUTM1Q86Y26 1132 aa21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 AKT1S1Q96B36 256 aa21.54■■□□□ 1.04
CHRNA3-206ENST00000559658 ZPR1O75312 459 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 RFC4P35249 363 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 DEFB132Q7Z7B7 95 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 CAMKK2Q96RR4 588 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 ZNF652Q9Y2D9 606 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 CHMP3Q9Y3E7 222 aa21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.53■■□□□ 1.04
CHRNA3-206ENST00000559658 CLEC4GQ6UXB4 293 aa21.52■■□□□ 1.04
CHRNA3-206ENST00000559658 SIL1Q9H173 461 aa21.52■■□□□ 1.04
CHRNA3-206ENST00000559658 ANO8Q9HCE9 1232 aaPredicted RBP21.52■■□□□ 1.04
CHRNA3-206ENST00000559658 CDHR2Q9BYE9 1310 aa21.52■■□□□ 1.04
CHRNA3-206ENST00000559658 HDAC5Q9UQL6 1122 aa21.52■■□□□ 1.03
CHRNA3-206ENST00000559658 COL4A1P02462 1669 aa21.51■■□□□ 1.03
CHRNA3-206ENST00000559658 IRS4O14654 1257 aaPredicted RBP21.51■■□□□ 1.03
CHRNA3-206ENST00000559658 HCLS1P14317 486 aaPredicted RBP21.51■■□□□ 1.03
CHRNA3-206ENST00000559658 FAM161AQ3B820 660 aa21.51■■□□□ 1.03
CHRNA3-206ENST00000559658 SSFA2P28290 1259 aa21.5■■□□□ 1.03
CHRNA3-206ENST00000559658 UTP14AQ9BVJ6 771 aaKnown RBP21.5■■□□□ 1.03
CHRNA3-206ENST00000559658 IL1RAPL2Q9NP60 686 aa21.5■■□□□ 1.03
CHRNA3-206ENST00000559658 ABCC12Q96J65 1359 aa21.5■■□□□ 1.03
CHRNA3-206ENST00000559658 ADRA2BP18089 450 aa21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 PTPN12Q05209 780 aaKnown RBP21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 TFCP2L1Q9NZI6 479 aa21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 SH3TC1Q8TE82 1336 aa21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 PARP10Q53GL7 1025 aa21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 ZNF594Q96JF6 807 aaPredicted RBP21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 PLA2G12BQ9BX93 195 aa21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 NOP58Q9Y2X3 529 aaKnown RBP21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 TNRC6CQ9HCJ0 1690 aaKnown RBP21.49■■□□□ 1.03
CHRNA3-206ENST00000559658 GYS1P13807 737 aa21.48■■□□□ 1.03
CHRNA3-206ENST00000559658 PELP1Q8IZL8 1130 aaKnown RBP21.48■■□□□ 1.03
CHRNA3-206ENST00000559658 CCDC24Q8N4L8 307 aa21.48■■□□□ 1.03
CHRNA3-206ENST00000559658 ERFEQ4G0M1 354 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 LRRCC1Q9C099 1032 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 CTSWP56202 376 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 C3orf67Q6ZVT6 689 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 COL23A1Q86Y22 540 aaPredicted RBP21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 RHPN1Q8TCX5 695 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 GREM2Q9H772 168 aa21.47■■□□□ 1.03
CHRNA3-206ENST00000559658 NFIXQ14938 502 aa21.46■■□□□ 1.03
CHRNA3-206ENST00000559658 TTLL11Q8NHH1 800 aa21.46■■□□□ 1.03
CHRNA3-206ENST00000559658 SPEF2Q9C093 1822 aa21.46■■□□□ 1.03
CHRNA3-206ENST00000559658 PNPLA7Q6ZV29 1317 aa21.46■■□□□ 1.03
CHRNA3-206ENST00000559658 TAF1P21675 1872 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms