RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 HSP90AB3PQ58FF7 597 aa16.29■□□□□ 0.2
LRRC28-214ENST00000559433 SOGA3Q5TF21 947 aa16.29■□□□□ 0.2
LRRC28-214ENST00000559433 C16orf71Q8IYS4 520 aaPredicted RBP16.29■□□□□ 0.2
LRRC28-214ENST00000559433 C8orf58Q8NAV2 365 aa16.29■□□□□ 0.2
LRRC28-214ENST00000559433 TSR2Q969E8 191 aaKnown RBP16.29■□□□□ 0.2
LRRC28-214ENST00000559433 HYPKQ9NX55 129 aa16.29■□□□□ 0.2
LRRC28-214ENST00000559433 DICER1Q9UPY3 1922 aaKnown RBP16.29■□□□□ 0.2
LRRC28-214ENST00000559433 LAMB2P55268 1798 aa16.28■□□□□ 0.2
LRRC28-214ENST00000559433 KDM2BQ8NHM5 1336 aa16.28■□□□□ 0.2
LRRC28-214ENST00000559433 NFKBIEO00221 500 aa16.28■□□□□ 0.2
LRRC28-214ENST00000559433 SALL2Q9Y467 1007 aaPredicted RBP16.28■□□□□ 0.2
LRRC28-214ENST00000559433 PLBD2Q8NHP8 589 aa16.27■□□□□ 0.2
LRRC28-214ENST00000559433 UTP14AQ9BVJ6 771 aaKnown RBP16.27■□□□□ 0.2
LRRC28-214ENST00000559433 IL16Q14005 1332 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 ALDH1B1P30837 517 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 TCIRG1Q13488 830 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 CRY2Q49AN0 593 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 ANKRD13DQ6ZTN6 518 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 RPGRQ92834 1020 aaKnown RBP16.26■□□□□ 0.19
LRRC28-214ENST00000559433 CHMP4AQ9BY43 222 aa16.26■□□□□ 0.19
LRRC28-214ENST00000559433 RNF123Q5XPI4 1314 aa16.25■□□□□ 0.19
LRRC28-214ENST00000559433 PRELPP51888 382 aa16.25■□□□□ 0.19
LRRC28-214ENST00000559433 NLRP10Q86W26 655 aa16.25■□□□□ 0.19
LRRC28-214ENST00000559433 TSPYL6Q8N831 410 aa16.25■□□□□ 0.19
LRRC28-214ENST00000559433 TAOK3Q9H2K8 898 aa16.25■□□□□ 0.19
LRRC28-214ENST00000559433 ZC3H4Q9UPT8 1303 aaKnown RBP16.24■□□□□ 0.19
LRRC28-214ENST00000559433 GOLGA2Q08379 1002 aa16.24■□□□□ 0.19
LRRC28-214ENST00000559433 CCDC93Q567U6 631 aa16.24■□□□□ 0.19
LRRC28-214ENST00000559433 CCDC30Q5VVM6 783 aa16.24■□□□□ 0.19
LRRC28-214ENST00000559433 DPY19L2Q6NUT2 758 aa16.24■□□□□ 0.19
LRRC28-214ENST00000559433 TMX4Q9H1E5 349 aaPredicted RBP16.24■□□□□ 0.19
LRRC28-214ENST00000559433 PHAXQ9H814 394 aaKnown RBP16.24■□□□□ 0.19
LRRC28-214ENST00000559433 DDX60Q8IY21 1712 aaKnown RBP16.24■□□□□ 0.19
LRRC28-214ENST00000559433 LTBP3Q9NS15 1303 aa16.23■□□□□ 0.19
LRRC28-214ENST00000559433 C3orf67Q6ZVT6 689 aa16.23■□□□□ 0.19
LRRC28-214ENST00000559433 RIC3Q7Z5B4 369 aa16.23■□□□□ 0.19
LRRC28-214ENST00000559433 WDR63Q8IWG1 891 aa16.23■□□□□ 0.19
LRRC28-214ENST00000559433 RBM17Q96I25 401 aaKnown RBP16.23■□□□□ 0.19
LRRC28-214ENST00000559433 TRMT112Q9UI30 125 aaKnown RBP16.23■□□□□ 0.19
LRRC28-214ENST00000559433 FANCIQ9NVI1 1328 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 ATP5J2-PTCD1G3V325 749 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 TWISTNBQ3B726 338 aaPredicted RBP16.22■□□□□ 0.19
LRRC28-214ENST00000559433 SLC10A5Q5PT55 438 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 C7orf43Q8WVR3 580 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 ZNF428Q96B54 188 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 NLRP3Q96P20 1036 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 RRAGCQ9HB90 399 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 NMRK2Q9NPI5 230 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 CACNA1FO60840 1977 aa16.22■□□□□ 0.19
LRRC28-214ENST00000559433 SH3TC1Q8TE82 1336 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 KIF3CO14782 793 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 TOMM70O94826 608 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 HOXA10P31260 410 aaPredicted RBP16.21■□□□□ 0.19
LRRC28-214ENST00000559433 OLFM4Q6UX06 510 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 RTKN2Q8IZC4 609 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 ISCA1Q9BUE6 129 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 STK31Q9BXU1 1019 aa16.21■□□□□ 0.19
LRRC28-214ENST00000559433 TCERG1O14776 1098 aaKnown RBP16.2■□□□□ 0.18
LRRC28-214ENST00000559433 DDX58O95786 925 aaKnown RBP16.2■□□□□ 0.18
LRRC28-214ENST00000559433 HCLS1P14317 486 aaPredicted RBP16.2■□□□□ 0.18
LRRC28-214ENST00000559433 SYNE4Q8N205 404 aa16.2■□□□□ 0.18
LRRC28-214ENST00000559433 CRAMP1Q96RY5 1269 aa16.2■□□□□ 0.18
LRRC28-214ENST00000559433 TAF1P21675 1872 aa16.2■□□□□ 0.18
LRRC28-214ENST00000559433 GLTPD2A6NH11 291 aa16.19■□□□□ 0.18
LRRC28-214ENST00000559433 PPEF1O14829 653 aaPredicted RBP16.19■□□□□ 0.18
LRRC28-214ENST00000559433 FKBP4Q02790 459 aaKnown RBP eCLIP16.19■□□□□ 0.18
LRRC28-214ENST00000559433 MYD88Q99836 296 aa16.18■□□□□ 0.18
LRRC28-214ENST00000559433 VEGFAP15692 232 aaPredicted RBP16.17■□□□□ 0.18
LRRC28-214ENST00000559433 TRIM28Q13263 835 aaKnown RBP16.17■□□□□ 0.18
LRRC28-214ENST00000559433 CC2D2BQ6DHV5 1058 aa16.17■□□□□ 0.18
LRRC28-214ENST00000559433 FAM89AQ96GI7 184 aa16.17■□□□□ 0.18
LRRC28-214ENST00000559433 MYH16Q9H6N6 1097 aa16.17■□□□□ 0.18
LRRC28-214ENST00000559433 ZNF277Q9NRM2 450 aaPredicted RBP16.17■□□□□ 0.18
LRRC28-214ENST00000559433 SNED1Q8TER0 1413 aa16.17■□□□□ 0.18
LRRC28-214ENST00000559433 ABCC4O15439 1325 aa16.17■□□□□ 0.18
LRRC28-214ENST00000559433 WDR90Q96KV7 1748 aa16.16■□□□□ 0.18
LRRC28-214ENST00000559433 HSPA6P17066 643 aa16.16■□□□□ 0.18
LRRC28-214ENST00000559433 EXOSC9Q06265 439 aaKnown RBP16.16■□□□□ 0.18
LRRC28-214ENST00000559433 GRIPAP1Q4V328 841 aa16.16■□□□□ 0.18
LRRC28-214ENST00000559433 RTL5Q5HYW3 569 aaPredicted RBP16.16■□□□□ 0.18
LRRC28-214ENST00000559433 SPINK5Q9NQ38 1064 aaPredicted RBP16.16■□□□□ 0.18
LRRC28-214ENST00000559433 MAP3K2Q9Y2U5 619 aa16.16■□□□□ 0.18
LRRC28-214ENST00000559433 SLC4A2P04920 1241 aa16.15■□□□□ 0.18
LRRC28-214ENST00000559433 KSR2Q6VAB6 950 aa16.15■□□□□ 0.18
LRRC28-214ENST00000559433 DDX46Q7L014 1031 aaKnown RBP16.15■□□□□ 0.18
LRRC28-214ENST00000559433 RBM46Q8TBY0 533 aaKnown RBP16.15■□□□□ 0.18
LRRC28-214ENST00000559433 PSMD1Q99460 953 aa16.15■□□□□ 0.18
LRRC28-214ENST00000559433 METTL22Q9BUU2 404 aaPredicted RBP16.15■□□□□ 0.18
LRRC28-214ENST00000559433 PI4KAP2A4QPH2 592 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 IRS4O14654 1257 aaPredicted RBP16.14■□□□□ 0.17
LRRC28-214ENST00000559433 VAMP4O75379 141 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 IARSP41252 1262 aaKnown RBP16.14■□□□□ 0.17
LRRC28-214ENST00000559433 G2E3Q7L622 706 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 SLC51AQ86UW1 340 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 PI4KAP1Q8N8J0 262 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 ZBTB38Q8NAP3 1195 aaPredicted RBP16.14■□□□□ 0.17
LRRC28-214ENST00000559433 CCDC191Q8NCU4 936 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 FOXD4L1Q9NU39 408 aa16.14■□□□□ 0.17
LRRC28-214ENST00000559433 CWC25Q9NXE8 425 aaPredicted RBP16.14■□□□□ 0.17
LRRC28-214ENST00000559433 MYH3P11055 1940 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms