RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NFIXQ14938 502 aa11.66□□□□□ -0.54
LDLR-210ENST00000559340 NBPF5PQ86XG9 351 aaPredicted RBP11.66□□□□□ -0.54
LDLR-210ENST00000559340 UTP14AQ9BVJ6 771 aaKnown RBP11.66□□□□□ -0.54
LDLR-210ENST00000559340 FHDC1Q9C0D6 1143 aaPredicted RBP11.66□□□□□ -0.54
LDLR-210ENST00000559340 NEURL1BA8MQ27 555 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 ATP5J2-PTCD1G3V325 749 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 SERPINB2P05120 415 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 MMP10P09238 476 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 TRIM27P14373 513 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 ST5P78524 1137 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 BEND3Q5T5X7 828 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 MSL1Q68DK7 614 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 INTS3Q68E01 1043 aaKnown RBP11.65□□□□□ -0.54
LDLR-210ENST00000559340 NLRP10Q86W26 655 aa11.65□□□□□ -0.54
LDLR-210ENST00000559340 C9orf78Q9NZ63 289 aaPredicted RBP11.65□□□□□ -0.54
LDLR-210ENST00000559340 IBTKQ9P2D0 1353 aaPredicted RBP11.65□□□□□ -0.55
LDLR-210ENST00000559340 MYH3P11055 1940 aa11.64□□□□□ -0.55
LDLR-210ENST00000559340 ABCC4O15439 1325 aa11.64□□□□□ -0.55
LDLR-210ENST00000559340 RRP1P56182 461 aaKnown RBP11.64□□□□□ -0.55
LDLR-210ENST00000559340 CLUAP1Q96AJ1 413 aa11.64□□□□□ -0.55
LDLR-210ENST00000559340 TRMT112Q9UI30 125 aaKnown RBP11.64□□□□□ -0.55
LDLR-210ENST00000559340 PDZRN3Q9UPQ7 1066 aa11.64□□□□□ -0.55
LDLR-210ENST00000559340 SUPT16HQ9Y5B9 1047 aaKnown RBP11.64□□□□□ -0.55
LDLR-210ENST00000559340 POLRMTO00411 1230 aaKnown RBP11.63□□□□□ -0.55
LDLR-210ENST00000559340 PCCAP05165 728 aaPredicted RBP11.63□□□□□ -0.55
LDLR-210ENST00000559340 IGKV5-2P06315 115 aa11.63□□□□□ -0.55
LDLR-210ENST00000559340 GCKRQ14397 625 aa11.63□□□□□ -0.55
LDLR-210ENST00000559340 SUSD4Q5VX71 490 aa11.63□□□□□ -0.55
LDLR-210ENST00000559340 CNBD1Q8NA66 436 aa11.63□□□□□ -0.55
LDLR-210ENST00000559340 ZBTB38Q8NAP3 1195 aaPredicted RBP11.63□□□□□ -0.55
LDLR-210ENST00000559340 ZNF784Q8NCA9 323 aaPredicted RBP11.63□□□□□ -0.55
LDLR-210ENST00000559340 SH3TC1Q8TE82 1336 aa11.62□□□□□ -0.55
LDLR-210ENST00000559340 FAM177BA6PVY3 158 aa11.62□□□□□ -0.55
LDLR-210ENST00000559340 PLIN1O60240 522 aa11.62□□□□□ -0.55
LDLR-210ENST00000559340 GNAI3P08754 354 aa11.62□□□□□ -0.55
LDLR-210ENST00000559340 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
LDLR-210ENST00000559340 DDX19BQ9UMR2 479 aa11.62□□□□□ -0.55
LDLR-210ENST00000559340 NRXN2Q9P2S2 1712 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 H7C1W4 665 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 GRM8O00222 908 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 DDR1Q08345 913 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 SLC10A5Q5PT55 438 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 ITPRIPQ8IWB1 547 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 TMEM57Q8N5G2 664 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 NLRP3Q96P20 1036 aa11.61□□□□□ -0.55
LDLR-210ENST00000559340 UBN2Q6ZU65 1347 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 CDHR2Q9BYE9 1310 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 NTSR2O95665 410 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 PDE6BP35913 854 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 MVPQ14764 893 aaKnown RBP11.6□□□□□ -0.55
LDLR-210ENST00000559340 PANK1Q8TE04 598 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 BRIP1Q9BX63 1249 aa11.6□□□□□ -0.55
LDLR-210ENST00000559340 IRS4O14654 1257 aaPredicted RBP11.59□□□□□ -0.55
LDLR-210ENST00000559340 PDE8AO60658 829 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 UBTFL1P0CB47 393 aaPredicted RBP11.59□□□□□ -0.55
LDLR-210ENST00000559340 AAMPQ13685 434 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 PRR5LQ6MZQ0 368 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 UBE3BQ7Z3V4 1068 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 FAM89AQ96GI7 184 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 USP44Q9H0E7 712 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 CD2APQ9Y5K6 639 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 LAMB2P55268 1798 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 UTYO14607 1347 aa11.59□□□□□ -0.55
LDLR-210ENST00000559340 KIF13BQ9NQT8 1826 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 NEFLP07196 543 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 GPR162Q16538 588 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 ERFEQ4G0M1 354 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 NUTM1Q86Y26 1132 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 PLA2G12BQ9BX93 195 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 COG6Q9Y2V7 657 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 RIC1Q4ADV7 1423 aa11.58□□□□□ -0.56
LDLR-210ENST00000559340 H0YIN7 160 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 GNAI2P04899 355 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 RLBP1P12271 317 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 TGFB2P61812 414 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 TNNQ9UQP3 1299 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 DDX60Q8IY21 1712 aaKnown RBP11.57□□□□□ -0.56
LDLR-210ENST00000559340 ANKRD31Q8N7Z5 1873 aa11.57□□□□□ -0.56
LDLR-210ENST00000559340 ZBTB7BO15156 539 aaPredicted RBP11.56□□□□□ -0.56
LDLR-210ENST00000559340 SF3B3Q15393 1217 aaKnown RBP11.56□□□□□ -0.56
LDLR-210ENST00000559340 CCDC152Q4G0S7 254 aa11.56□□□□□ -0.56
LDLR-210ENST00000559340 RTL5Q5HYW3 569 aaPredicted RBP11.56□□□□□ -0.56
LDLR-210ENST00000559340 RPGRQ92834 1020 aaKnown RBP11.56□□□□□ -0.56
LDLR-210ENST00000559340 NBPF7P0C2Y1 421 aaPredicted RBP11.55□□□□□ -0.56
LDLR-210ENST00000559340 HCLS1P14317 486 aaPredicted RBP11.55□□□□□ -0.56
LDLR-210ENST00000559340 ALDH1B1P30837 517 aa11.55□□□□□ -0.56
LDLR-210ENST00000559340 CASP7P55210 303 aa11.55□□□□□ -0.56
LDLR-210ENST00000559340 C1QTNF8P60827 252 aa11.55□□□□□ -0.56
LDLR-210ENST00000559340 DDX46Q7L014 1031 aaKnown RBP11.55□□□□□ -0.56
LDLR-210ENST00000559340 KLHL34Q8N239 644 aa11.55□□□□□ -0.56
LDLR-210ENST00000559340 JARID2Q92833 1246 aaPredicted RBP11.55□□□□□ -0.56
LDLR-210ENST00000559340 RBM17Q96I25 401 aaKnown RBP11.55□□□□□ -0.56
LDLR-210ENST00000559340 MEIS3Q99687 375 aa11.55□□□□□ -0.56
LDLR-210ENST00000559340 C10orf71Q711Q0 1435 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 KLRG2A4D1S0 409 aaPredicted RBP11.54□□□□□ -0.56
LDLR-210ENST00000559340 NPR1P16066 1061 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 CTSWP56202 376 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 C20orf194Q5TEA3 1177 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 C2CD5Q86YS7 1000 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 CNKSR1Q969H4 720 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms