RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 C8orf58Q8NAV2 365 aa5.61□□□□□ -1.51
SNX1-205ENST00000559339 TSR2Q969E8 191 aaKnown RBP5.61□□□□□ -1.51
SNX1-205ENST00000559339 GPBP1L1Q9HC44 474 aaPredicted RBP5.61□□□□□ -1.51
SNX1-205ENST00000559339 IBTKQ9P2D0 1353 aaPredicted RBP5.61□□□□□ -1.51
SNX1-205ENST00000559339 TRMT112Q9UI30 125 aaKnown RBP5.61□□□□□ -1.51
SNX1-205ENST00000559339 UBN2Q6ZU65 1347 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 SH3TC1Q8TE82 1336 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 FANCIQ9NVI1 1328 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 C21orf2O43822 256 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 LMNB1P20700 586 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 CRY2Q49AN0 593 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 ERFEQ4G0M1 354 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 GRIPAP1Q4V328 841 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 C9orf131Q5VYM1 1079 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 PRPF40BQ6NWY9 871 aaKnown RBP5.6□□□□□ -1.51
SNX1-205ENST00000559339 NLRP10Q86W26 655 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 RTKN2Q8IZC4 609 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 TSPYL6Q8N831 410 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 RBM17Q96I25 401 aaKnown RBP5.6□□□□□ -1.51
SNX1-205ENST00000559339 TAOK3Q9H2K8 898 aa5.6□□□□□ -1.51
SNX1-205ENST00000559339 SCN7AQ01118 1682 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 KDM2BQ8NHM5 1336 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 ZC3H4Q9UPT8 1303 aaKnown RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 E9PSI1 815 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 ATP5J2-PTCD1G3V325 749 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 NTSR2O95665 410 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 TRIM28Q13263 835 aaKnown RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 POLA2Q14181 598 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 CCDC93Q567U6 631 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 SLC10A5Q5PT55 438 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 CC2D2BQ6DHV5 1058 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 DPY19L2Q6NUT2 758 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 KSR2Q6VAB6 950 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 DDX46Q7L014 1031 aaKnown RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 ZBTB38Q8NAP3 1195 aaPredicted RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 CCDC191Q8NCU4 936 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 ZNF526Q8TF50 670 aaPredicted RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 PHAXQ9H814 394 aaKnown RBP5.59□□□□□ -1.51
SNX1-205ENST00000559339 RNF181Q9P0P0 153 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 MAP3K2Q9Y2U5 619 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 LAMB4A4D0S4 1761 aa5.59□□□□□ -1.51
SNX1-205ENST00000559339 KIF13BQ9NQT8 1826 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 PI4KAP2A4QPH2 592 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 TCERG1O14776 1098 aaKnown RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 ABCB7O75027 752 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 VAMP4O75379 141 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 BBOX1O75936 387 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 HCLS1P14317 486 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 HOXA10P31260 410 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 EXOSC9Q06265 439 aaKnown RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 FLIIQ13045 1269 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 FKBP5Q13451 457 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 C16orf71Q8IYS4 520 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 PI4KAP1Q8N8J0 262 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 FAM89AQ96GI7 184 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 CRAMP1Q96RY5 1269 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 MYD88Q99836 296 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 ISCA1Q9BUE6 129 aa5.58□□□□□ -1.52
SNX1-205ENST00000559339 METTL22Q9BUU2 404 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 CWC25Q9NXE8 425 aaPredicted RBP5.58□□□□□ -1.52
SNX1-205ENST00000559339 RIC1Q4ADV7 1423 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 NRXN2Q9P2S2 1712 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 ABCC12Q96J65 1359 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 ZNF521Q96K83 1311 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 LTBP3Q9NS15 1303 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 IRS4O14654 1257 aaPredicted RBP5.57□□□□□ -1.52
SNX1-205ENST00000559339 PPEF1O14829 653 aaPredicted RBP5.57□□□□□ -1.52
SNX1-205ENST00000559339 FKBP4Q02790 459 aaKnown RBP eCLIP5.57□□□□□ -1.52
SNX1-205ENST00000559339 RASSF7Q02833 373 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 RTL5Q5HYW3 569 aaPredicted RBP5.57□□□□□ -1.52
SNX1-205ENST00000559339 TMC4Q7Z404 712 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 C7orf43Q8WVR3 580 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 JDP2Q8WYK2 163 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 ZNF428Q96B54 188 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 BCORQ6W2J9 1755 aa5.57□□□□□ -1.52
SNX1-205ENST00000559339 N4BP2Q86UW6 1770 aaPredicted RBP5.57□□□□□ -1.52
SNX1-205ENST00000559339 ADCY9O60503 1353 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 CHD4Q14839 1912 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 GLTPD2A6NH11 291 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 NFKBIEO00221 500 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 PDE8AO60658 829 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 PCCAP05165 728 aaPredicted RBP5.56□□□□□ -1.52
SNX1-205ENST00000559339 CT47B1P0C2W7 299 aaPredicted RBP5.56□□□□□ -1.52
SNX1-205ENST00000559339 GRAPQ13588 217 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 SF3B3Q15393 1217 aaKnown RBP5.56□□□□□ -1.52
SNX1-205ENST00000559339 CCDC152Q4G0S7 254 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 MIER1Q8N108 512 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 SUPT20HQ8NEM7 779 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 LINS1Q8NG48 757 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 GRAPLQ8TC17 118 aaPredicted RBP5.56□□□□□ -1.52
SNX1-205ENST00000559339 DNAAF4Q8WXU2 420 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 PSMD1Q99460 953 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 ATP6V0A2Q9Y487 856 aa5.56□□□□□ -1.52
SNX1-205ENST00000559339 AFDNP55196 1824 aaKnown RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 ABCC4O15439 1325 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 NEURL1BA8MQ27 555 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 TOMM70O94826 608 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 VEGFAP15692 232 aaPredicted RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 IARSP41252 1262 aaKnown RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 C1QTNF8P60827 252 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms