RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 ZCRB1Q8TBF4 217 aaKnown RBP9.6□□□□□ -0.87
TRAF3-206ENST00000558880 PDGFDQ9GZP0 370 aaPredicted RBP9.6□□□□□ -0.87
TRAF3-206ENST00000558880 DAXXQ9UER7 740 aaPredicted RBP9.6□□□□□ -0.87
TRAF3-206ENST00000558880 RRP7AQ9Y3A4 280 aaKnown RBP9.6□□□□□ -0.87
TRAF3-206ENST00000558880 LRRC37A3O60309 1634 aa9.6□□□□□ -0.87
TRAF3-206ENST00000558880 PKD1L3Q7Z443 1732 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 CFHP08603 1231 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 TATP17735 454 aaPredicted RBP9.59□□□□□ -0.87
TRAF3-206ENST00000558880 NFE2L2Q16236 605 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 RDH13Q8NBN7 331 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 RAPGEF4Q8WZA2 1011 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 LGR6Q9HBX8 967 aa9.59□□□□□ -0.87
TRAF3-206ENST00000558880 DCTN1Q14203 1278 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 PTF1AQ7RTS3 328 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 CDCA7Q9BWT1 371 aaPredicted RBP9.58□□□□□ -0.88
TRAF3-206ENST00000558880 FHDC1Q9C0D6 1143 aaPredicted RBP9.58□□□□□ -0.88
TRAF3-206ENST00000558880 CEMIPQ8WUJ3 1361 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 WNK3Q9BYP7 1800 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 ADAMTS7Q9UKP4 1686 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 CASZ1Q86V15 1759 aa9.58□□□□□ -0.88
TRAF3-206ENST00000558880 UTRNP46939 3433 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 PARP4Q9UKK3 1724 aaKnown RBP9.57□□□□□ -0.88
TRAF3-206ENST00000558880 AMOTQ4VCS5 1084 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 PLEKHO1Q53GL0 409 aaPredicted RBP9.57□□□□□ -0.88
TRAF3-206ENST00000558880 AKAP4Q5JQC9 854 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 NECTIN2Q92692 538 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 SYT17Q9BSW7 474 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 THUMPD2Q9BTF0 503 aaKnown RBP9.57□□□□□ -0.88
TRAF3-206ENST00000558880 SLC24A3Q9HC58 644 aa9.57□□□□□ -0.88
TRAF3-206ENST00000558880 BCL9O00512 1426 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 EXOC5O00471 708 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 RNMTO43148 476 aaKnown RBP9.56□□□□□ -0.88
TRAF3-206ENST00000558880 RIPK4P57078 832 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 COPS2P61201 443 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 DDB1Q16531 1140 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 CCDC27Q2M243 656 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 ZNF530Q6P9A1 599 aaPredicted RBP9.56□□□□□ -0.88
TRAF3-206ENST00000558880 MPRIPQ6WCQ1 1025 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 WWC1Q8IX03 1113 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 GAS2L2Q8NHY3 880 aa9.56□□□□□ -0.88
TRAF3-206ENST00000558880 MAP3K5Q99683 1374 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 GPR162Q16538 588 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 MCM10Q7L590 875 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 IFNL2Q8IZJ0 200 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 DDX54Q8TDD1 881 aaKnown RBP9.55□□□□□ -0.88
TRAF3-206ENST00000558880 MTRQ99707 1265 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 SPG7Q9UQ90 795 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 PCDH11XQ9BZA7 1347 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 PCDH11YQ9BZA8 1340 aa9.55□□□□□ -0.88
TRAF3-206ENST00000558880 MRC1P22897 1456 aa9.54□□□□□ -0.88
TRAF3-206ENST00000558880 GNAT3A8MTJ3 354 aa9.54□□□□□ -0.88
TRAF3-206ENST00000558880 HTATSF1O43719 755 aaKnown RBP9.54□□□□□ -0.88
TRAF3-206ENST00000558880 ZNF853P0CG23 659 aa9.54□□□□□ -0.88
TRAF3-206ENST00000558880 NEUROD2Q15784 382 aa9.54□□□□□ -0.88
TRAF3-206ENST00000558880 KMT5BQ4FZB7 885 aa9.54□□□□□ -0.88
TRAF3-206ENST00000558880 REPIN1Q9BWE0 567 aaKnown RBP9.54□□□□□ -0.88
TRAF3-206ENST00000558880 CEP350Q5VT06 3117 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 TOGARAM1Q9Y4F4 1720 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 TTLL12Q14166 644 aaPredicted RBP9.53□□□□□ -0.88
TRAF3-206ENST00000558880 SULF1Q8IWU6 871 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 TRMT2AQ8IZ69 625 aaKnown RBP9.53□□□□□ -0.88
TRAF3-206ENST00000558880 ZNF516Q92618 1163 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 PNNQ9H307 717 aaKnown RBP9.53□□□□□ -0.88
TRAF3-206ENST00000558880 SALL2Q9Y467 1007 aaPredicted RBP9.53□□□□□ -0.88
TRAF3-206ENST00000558880 PCDHB3Q9Y5E6 796 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 MAPK8IP3Q9UPT6 1336 aa9.53□□□□□ -0.88
TRAF3-206ENST00000558880 TRIM66O15016 1216 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 KCNQ3O43525 872 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 ITGBL1O95965 494 aaPredicted RBP9.52□□□□□ -0.89
TRAF3-206ENST00000558880 KCNC4Q03721 635 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 TJAP1Q5JTD0 557 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 DCAF5Q96JK2 942 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 AK7Q96M32 723 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 GPCPD1Q9NPB8 672 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 STK32BQ9NY57 414 aa9.52□□□□□ -0.89
TRAF3-206ENST00000558880 CHL1O00533 1208 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 CLCN1P35523 988 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 HNRNPUQ00839 825 aaKnown RBP eCLIP9.51□□□□□ -0.89
TRAF3-206ENST00000558880 BLOC1S3Q6QNY0 202 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 PIGBQ92521 554 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 PRR14Q9BWN1 585 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 SLC52A2Q9HAB3 445 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 ZBED9Q6R2W3 1325 aa9.51□□□□□ -0.89
TRAF3-206ENST00000558880 HEG1Q9ULI3 1381 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 ERVV-2B6SEH9 535 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 ACTN4O43707 911 aaKnown RBP9.5□□□□□ -0.89
TRAF3-206ENST00000558880 SLFN5Q08AF3 891 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 PUS10Q3MIT2 529 aaKnown RBP9.5□□□□□ -0.89
TRAF3-206ENST00000558880 C1orf141Q5JVX7 400 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 NFATC2IPQ8NCF5 419 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 ACSBG1Q96GR2 724 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 SLC4A9Q96Q91 983 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 MTFR1LQ9H019 292 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 IL21Q9HBE4 155 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 MIS18AQ9NYP9 233 aa9.5□□□□□ -0.89
TRAF3-206ENST00000558880 PLSCR1O15162 318 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 AMHR2Q16671 573 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 DUSP27Q5VZP5 1158 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 WDR63Q8IWG1 891 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 NGEFQ8N5V2 710 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms