RNA–Protein interactions for RNA: ENST00000558439.5

AP4E1-202, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best)

Gene AP4E1, Length 4,165 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-202ENST00000558439 SCAND2PQ9GZW5 306 aaPredicted RBP18.27■□□□□ 0.51
AP4E1-202ENST00000558439 NSFL1CQ9UNZ2 370 aaKnown RBP18.27■□□□□ 0.51
AP4E1-202ENST00000558439 ZKSCAN5Q9Y2L8 839 aa18.27■□□□□ 0.51
AP4E1-202ENST00000558439 RAD50Q92878 1312 aa18.26■□□□□ 0.51
AP4E1-202ENST00000558439 CHMP4CQ96CF2 233 aa18.26■□□□□ 0.51
AP4E1-202ENST00000558439 OSBPL3Q9H4L5 887 aa18.26■□□□□ 0.51
AP4E1-202ENST00000558439 SNRPA1P09661 255 aaKnown RBP18.26■□□□□ 0.51
AP4E1-202ENST00000558439 PTH1RQ03431 593 aa18.26■□□□□ 0.51
AP4E1-202ENST00000558439 RRP12Q5JTH9 1297 aaKnown RBP18.26■□□□□ 0.51
AP4E1-202ENST00000558439 MYOM1P52179 1685 aa18.26■□□□□ 0.51
AP4E1-202ENST00000558439 BEND3Q5T5X7 828 aa18.25■□□□□ 0.51
AP4E1-202ENST00000558439 DDX17Q92841 729 aaKnown RBP18.25■□□□□ 0.51
AP4E1-202ENST00000558439 CFAP45Q9UL16 551 aa18.25■□□□□ 0.51
AP4E1-202ENST00000558439 DDX21Q9NR30 783 aaKnown RBP eCLIP18.25■□□□□ 0.51
AP4E1-202ENST00000558439 CCDC171Q6TFL3 1326 aa18.25■□□□□ 0.51
AP4E1-202ENST00000558439 CHST3Q7LGC8 479 aa18.24■□□□□ 0.51
AP4E1-202ENST00000558439 TFCP2Q12800 502 aa18.24■□□□□ 0.51
AP4E1-202ENST00000558439 CCDC129Q6ZRS4 1044 aa18.24■□□□□ 0.51
AP4E1-202ENST00000558439 ZNF396Q96N95 335 aaPredicted RBP18.24■□□□□ 0.51
AP4E1-202ENST00000558439 DACT1Q9NYF0 836 aa18.24■□□□□ 0.51
AP4E1-202ENST00000558439 KIF6Q6ZMV9 814 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 KAT6BQ8WYB5 2073 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 MED14O60244 1454 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 IDH1O75874 414 aaKnown RBP18.23■□□□□ 0.51
AP4E1-202ENST00000558439 RUFY3Q7L099 469 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 SMC2O95347 1197 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 HOMER1Q86YM7 354 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 DEPDC5O75140 1603 aa18.23■□□□□ 0.51
AP4E1-202ENST00000558439 HMGN5P82970 282 aaKnown RBP18.22■□□□□ 0.51
AP4E1-202ENST00000558439 CPSF1Q10570 1443 aaKnown RBP18.22■□□□□ 0.51
AP4E1-202ENST00000558439 ZNF790Q6PG37 636 aa18.22■□□□□ 0.51
AP4E1-202ENST00000558439 GIGYF1O75420 1035 aaPredicted RBP18.22■□□□□ 0.51
AP4E1-202ENST00000558439 GPTP24298 496 aa18.22■□□□□ 0.51
AP4E1-202ENST00000558439 VPS53Q5VIR6 699 aa18.22■□□□□ 0.51
AP4E1-202ENST00000558439 Q6ZUG5 572 aa18.22■□□□□ 0.51
AP4E1-202ENST00000558439 EAF2Q96CJ1 260 aaPredicted RBP18.22■□□□□ 0.51
AP4E1-202ENST00000558439 U3KPZ7 1027 aaPredicted RBP18.22■□□□□ 0.51
AP4E1-202ENST00000558439 AKAP17AQ02040 695 aaKnown RBP18.21■□□□□ 0.51
AP4E1-202ENST00000558439 ADCK5Q3MIX3 580 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 BABAM1Q9NWV8 329 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 STAP2Q9UGK3 403 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 MROH1Q8NDA8 1641 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 PIK3C2BO00750 1634 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 DIP2CQ9Y2E4 1556 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 SETD1BQ9UPS6 1966 aaKnown RBP18.21■□□□□ 0.51
AP4E1-202ENST00000558439 TPM3P06753 285 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 TIMM10P62072 90 aa18.21■□□□□ 0.51
AP4E1-202ENST00000558439 CPS1P31327 1500 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 C17orf53Q8N3J3 647 aaPredicted RBP18.2■□□□□ 0.5
AP4E1-202ENST00000558439 OFD1O75665 1012 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 ERBB4Q15303 1308 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 ZNF165P49910 485 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 ZNF496Q96IT1 587 aaPredicted RBP18.2■□□□□ 0.5
AP4E1-202ENST00000558439 DBNDD2Q9BQY9 259 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 TBC1D2BQ9UPU7 963 aa18.2■□□□□ 0.5
AP4E1-202ENST00000558439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.2■□□□□ 0.5
AP4E1-202ENST00000558439 METTL24Q5JXM2 366 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 RASSF8Q8NHQ8 419 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 NAT10Q9H0A0 1025 aaKnown RBP18.19■□□□□ 0.5
AP4E1-202ENST00000558439 MYO3AQ8NEV4 1616 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 SLC27A2O14975 620 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 DHX16O60231 1041 aaKnown RBP18.19■□□□□ 0.5
AP4E1-202ENST00000558439 POLR3DP05423 398 aaPredicted RBP18.19■□□□□ 0.5
AP4E1-202ENST00000558439 CDK11BP21127 795 aaKnown RBP18.19■□□□□ 0.5
AP4E1-202ENST00000558439 ZDHHC9Q9Y397 364 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 CD163L1Q9NR16 1453 aa18.19■□□□□ 0.5
AP4E1-202ENST00000558439 ZC3H13Q5T200 1668 aaKnown RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 HOXB7P09629 217 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 HSP90AB3PQ58FF7 597 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 NOL7Q9UMY1 257 aaKnown RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 AOX1Q06278 1338 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 TULP1O00294 542 aaPredicted RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 ME3Q16798 604 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 CCAR2Q8N163 923 aaKnown RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 CWC25Q9NXE8 425 aaPredicted RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 IMMTQ16891 758 aaKnown RBP18.18■□□□□ 0.5
AP4E1-202ENST00000558439 CCDC82Q8N4S0 544 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 USP16Q9Y5T5 823 aa18.18■□□□□ 0.5
AP4E1-202ENST00000558439 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 MAP7D2Q96T17 732 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 HMG20BQ9P0W2 317 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 MCMDC2Q4G0Z9 681 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 ANO6Q4KMQ2 910 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 FRMPD1Q5SYB0 1578 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 VPS37DQ86XT2 251 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 UVSSAQ2YD98 709 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 PPP1R9BQ96SB3 815 aa18.17■□□□□ 0.5
AP4E1-202ENST00000558439 LSG1Q9H089 658 aaKnown RBP18.17■□□□□ 0.5
AP4E1-202ENST00000558439 TLR7Q9NYK1 1049 aaKnown RBP18.17■□□□□ 0.5
AP4E1-202ENST00000558439 A0A0D9SFI3 127 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 MCM5P33992 734 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 NOLC1Q14978 699 aaKnown RBP eCLIP18.16■□□□□ 0.5
AP4E1-202ENST00000558439 C16orf45Q96MC5 204 aaPredicted RBP18.16■□□□□ 0.5
AP4E1-202ENST00000558439 CTNNA3Q9UI47 895 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 NLRP1Q9C000 1473 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 BIN1O00499 593 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 PES1O00541 588 aaKnown RBP18.16■□□□□ 0.5
AP4E1-202ENST00000558439 SAFBQ15424 915 aaKnown RBP eCLIP18.16■□□□□ 0.5
AP4E1-202ENST00000558439 LUZP1Q86V48 1076 aa18.16■□□□□ 0.5
AP4E1-202ENST00000558439 COL3A1P02461 1466 aaPredicted RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms