RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 DNAAF4Q8WXU2 420 aa18.28■□□□□ 0.52
USP3-205ENST00000557884 IBTKQ9P2D0 1353 aaPredicted RBP18.28■□□□□ 0.52
USP3-205ENST00000557884 AFDNP55196 1824 aaKnown RBP18.28■□□□□ 0.52
USP3-205ENST00000557884 IGKV5-2P06315 115 aa18.27■□□□□ 0.52
USP3-205ENST00000557884 PDE6BP35913 854 aa18.27■□□□□ 0.52
USP3-205ENST00000557884 NEXNQ0ZGT2 675 aa18.27■□□□□ 0.52
USP3-205ENST00000557884 TRIM28Q13263 835 aaKnown RBP18.27■□□□□ 0.52
USP3-205ENST00000557884 RTL5Q5HYW3 569 aaPredicted RBP18.27■□□□□ 0.52
USP3-205ENST00000557884 UTRNP46939 3433 aa18.27■□□□□ 0.51
USP3-205ENST00000557884 H0YIN7 160 aa18.26■□□□□ 0.51
USP3-205ENST00000557884 HCLS1P14317 486 aaPredicted RBP18.26■□□□□ 0.51
USP3-205ENST00000557884 KCNA3P22001 575 aa18.26■□□□□ 0.51
USP3-205ENST00000557884 GPR162Q16538 588 aa18.26■□□□□ 0.51
USP3-205ENST00000557884 CWF19L2Q2TBE0 894 aaKnown RBP18.26■□□□□ 0.51
USP3-205ENST00000557884 JARID2Q92833 1246 aaPredicted RBP18.26■□□□□ 0.51
USP3-205ENST00000557884 CWC25Q9NXE8 425 aaPredicted RBP18.26■□□□□ 0.51
USP3-205ENST00000557884 ARFGEF2Q9Y6D5 1785 aa18.25■□□□□ 0.51
USP3-205ENST00000557884 SLC4A10Q6U841 1118 aa18.25■□□□□ 0.51
USP3-205ENST00000557884 FAM89AQ96GI7 184 aa18.25■□□□□ 0.51
USP3-205ENST00000557884 SH3TC1Q8TE82 1336 aa18.24■□□□□ 0.51
USP3-205ENST00000557884 NEURL1BA8MQ27 555 aa18.24■□□□□ 0.51
USP3-205ENST00000557884 YBX3P16989 372 aaKnown RBP eCLIP18.24■□□□□ 0.51
USP3-205ENST00000557884 C3orf67Q6ZVT6 689 aa18.24■□□□□ 0.51
USP3-205ENST00000557884 CCDC191Q8NCU4 936 aa18.24■□□□□ 0.51
USP3-205ENST00000557884 ZNF622Q969S3 477 aaKnown RBP eCLIP18.24■□□□□ 0.51
USP3-205ENST00000557884 NOB1Q9ULX3 412 aaKnown RBP18.24■□□□□ 0.51
USP3-205ENST00000557884 PTPRCP08575 1304 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 DCAF8L1A6NGE4 600 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 BCAR3O75815 825 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 PIM2Q9P1W9 311 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 BCS1LQ9Y276 419 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 KIF13BQ9NQT8 1826 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 RNF123Q5XPI4 1314 aa18.23■□□□□ 0.51
USP3-205ENST00000557884 DALRD3Q5D0E6 543 aaKnown RBP18.22■□□□□ 0.51
USP3-205ENST00000557884 BEND3Q5T5X7 828 aa18.22■□□□□ 0.51
USP3-205ENST00000557884 ZBTB38Q8NAP3 1195 aaPredicted RBP18.22■□□□□ 0.51
USP3-205ENST00000557884 LINS1Q8NG48 757 aa18.22■□□□□ 0.51
USP3-205ENST00000557884 PDZRN3Q9UPQ7 1066 aa18.22■□□□□ 0.51
USP3-205ENST00000557884 KIAA1551Q9HCM1 1747 aa18.22■□□□□ 0.51
USP3-205ENST00000557884 ANKRD36CQ5JPF3 1778 aa18.22■□□□□ 0.51
USP3-205ENST00000557884 KLRG2A4D1S0 409 aaPredicted RBP18.21■□□□□ 0.51
USP3-205ENST00000557884 IRS4O14654 1257 aaPredicted RBP18.21■□□□□ 0.51
USP3-205ENST00000557884 SRGNP10124 158 aa18.21■□□□□ 0.51
USP3-205ENST00000557884 SLC10A5Q5PT55 438 aa18.21■□□□□ 0.51
USP3-205ENST00000557884 N4BP2Q86UW6 1770 aaPredicted RBP18.21■□□□□ 0.51
USP3-205ENST00000557884 PCCAP05165 728 aaPredicted RBP18.2■□□□□ 0.5
USP3-205ENST00000557884 NPR1P16066 1061 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 GCKRQ14397 625 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 TTLL6Q8N841 843 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 MASTLQ96GX5 879 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 NLRP3Q96P20 1036 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 ANKRD31Q8N7Z5 1873 aa18.2■□□□□ 0.5
USP3-205ENST00000557884 TNRC6CQ9HCJ0 1690 aaKnown RBP18.19■□□□□ 0.5
USP3-205ENST00000557884 BRPF1P55201 1214 aaPredicted RBP18.19■□□□□ 0.5
USP3-205ENST00000557884 RIC1Q4ADV7 1423 aa18.19■□□□□ 0.5
USP3-205ENST00000557884 STYK1Q6J9G0 422 aa18.19■□□□□ 0.5
USP3-205ENST00000557884 RPGRQ92834 1020 aaKnown RBP18.19■□□□□ 0.5
USP3-205ENST00000557884 FRAT1Q92837 279 aaPredicted RBP18.19■□□□□ 0.5
USP3-205ENST00000557884 ZNF219Q9P2Y4 722 aaPredicted RBP18.19■□□□□ 0.5
USP3-205ENST00000557884 KIF16BQ96L93 1317 aa18.19■□□□□ 0.5
USP3-205ENST00000557884 CRY2Q49AN0 593 aa18.18■□□□□ 0.5
USP3-205ENST00000557884 UBE3BQ7Z3V4 1068 aa18.18■□□□□ 0.5
USP3-205ENST00000557884 SRCIN1Q9C0H9 1055 aa18.18■□□□□ 0.5
USP3-205ENST00000557884 COL11A2P13942 1736 aaPredicted RBP18.18■□□□□ 0.5
USP3-205ENST00000557884 CNKSR1Q969H4 720 aa18.17■□□□□ 0.5
USP3-205ENST00000557884 API5Q9BZZ5 524 aaKnown RBP18.17■□□□□ 0.5
USP3-205ENST00000557884 H7C1W4 665 aa18.16■□□□□ 0.5
USP3-205ENST00000557884 ALDH1L1O75891 902 aa18.16■□□□□ 0.5
USP3-205ENST00000557884 PRPF40BQ6NWY9 871 aaKnown RBP18.16■□□□□ 0.5
USP3-205ENST00000557884 RBM17Q96I25 401 aaKnown RBP18.16■□□□□ 0.5
USP3-205ENST00000557884 TNNQ9UQP3 1299 aa18.16■□□□□ 0.5
USP3-205ENST00000557884 GRIN3BO60391 1043 aa18.15■□□□□ 0.5
USP3-205ENST00000557884 CCDC85AQ96PX6 553 aaPredicted RBP18.15■□□□□ 0.5
USP3-205ENST00000557884 CDHR2Q9BYE9 1310 aa18.15■□□□□ 0.5
USP3-205ENST00000557884 CACNA1FO60840 1977 aa18.14■□□□□ 0.49
USP3-205ENST00000557884 IPO8O15397 1037 aaKnown RBP18.14■□□□□ 0.49
USP3-205ENST00000557884 HSP90B1P14625 803 aaKnown RBP18.14■□□□□ 0.49
USP3-205ENST00000557884 CASP7P55210 303 aa18.14■□□□□ 0.49
USP3-205ENST00000557884 C9orf78Q9NZ63 289 aaPredicted RBP18.14■□□□□ 0.49
USP3-205ENST00000557884 GRM8O00222 908 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 C21orf2O43822 256 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 PDE8AO60658 829 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 TRIM27P14373 513 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 ALDH1B1P30837 517 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 HOXA10P31260 410 aaPredicted RBP18.13■□□□□ 0.49
USP3-205ENST00000557884 ATF7IPQ6VMQ6 1270 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 ARHGAP27Q6ZUM4 889 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 DDX46Q7L014 1031 aaKnown RBP18.13■□□□□ 0.49
USP3-205ENST00000557884 ARHGAP45Q92619 1136 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 CLUAP1Q96AJ1 413 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 RCAN3Q9UKA8 241 aa18.13■□□□□ 0.49
USP3-205ENST00000557884 CTSWP56202 376 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 SF3B3Q15393 1217 aaKnown RBP18.12■□□□□ 0.49
USP3-205ENST00000557884 ZKSCAN2Q63HK3 967 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 OLFM4Q6UX06 510 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 SLC51AQ86UW1 340 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 CRAMP1Q96RY5 1269 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 ABCC4O15439 1325 aa18.12■□□□□ 0.49
USP3-205ENST00000557884 CCT4P50991 539 aaKnown RBP18.11■□□□□ 0.49
USP3-205ENST00000557884 CCDC152Q4G0S7 254 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms