RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 KLRG2A4D1S0 409 aaPredicted RBP17.71■□□□□ 0.43
VPS33B-206ENST00000557358 C21orf2O43822 256 aa17.71■□□□□ 0.43
VPS33B-206ENST00000557358 NTSR2O95665 410 aa17.71■□□□□ 0.43
VPS33B-206ENST00000557358 C9orf131Q5VYM1 1079 aa17.71■□□□□ 0.43
VPS33B-206ENST00000557358 NLRP10Q86W26 655 aa17.71■□□□□ 0.43
VPS33B-206ENST00000557358 TSPYL6Q8N831 410 aa17.71■□□□□ 0.43
VPS33B-206ENST00000557358 RBM17Q96I25 401 aaKnown RBP17.71■□□□□ 0.43
VPS33B-206ENST00000557358 GPBP1L1Q9HC44 474 aaPredicted RBP17.71■□□□□ 0.43
VPS33B-206ENST00000557358 ZNF219Q9P2Y4 722 aaPredicted RBP17.71■□□□□ 0.43
VPS33B-206ENST00000557358 CACNA1FO60840 1977 aa17.7■□□□□ 0.42
VPS33B-206ENST00000557358 NEXNQ0ZGT2 675 aa17.7■□□□□ 0.42
VPS33B-206ENST00000557358 RNF181Q9P0P0 153 aa17.7■□□□□ 0.42
VPS33B-206ENST00000557358 RIC1Q4ADV7 1423 aa17.7■□□□□ 0.42
VPS33B-206ENST00000557358 SLC4A2P04920 1241 aa17.69■□□□□ 0.42
VPS33B-206ENST00000557358 LMNB1P20700 586 aa17.69■□□□□ 0.42
VPS33B-206ENST00000557358 CCDC93Q567U6 631 aa17.69■□□□□ 0.42
VPS33B-206ENST00000557358 PHAXQ9H814 394 aaKnown RBP17.69■□□□□ 0.42
VPS33B-206ENST00000557358 COL11A2P13942 1736 aaPredicted RBP17.69■□□□□ 0.42
VPS33B-206ENST00000557358 ABCC12Q96J65 1359 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 EXOSC9Q06265 439 aaKnown RBP17.68■□□□□ 0.42
VPS33B-206ENST00000557358 CACNA1SQ13698 1873 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 CRY2Q49AN0 593 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 SLC10A5Q5PT55 438 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 RTKN2Q8IZC4 609 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 TAOK3Q9H2K8 898 aa17.68■□□□□ 0.42
VPS33B-206ENST00000557358 E9PSI1 815 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 ATP5J2-PTCD1G3V325 749 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 TRIM28Q13263 835 aaKnown RBP17.67■□□□□ 0.42
VPS33B-206ENST00000557358 GRIPAP1Q4V328 841 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 CC2D2BQ6DHV5 1058 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 MIER1Q8N108 512 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 ZNF526Q8TF50 670 aaPredicted RBP17.67■□□□□ 0.42
VPS33B-206ENST00000557358 ISCA1Q9BUE6 129 aa17.67■□□□□ 0.42
VPS33B-206ENST00000557358 ZC3H4Q9UPT8 1303 aaKnown RBP17.67■□□□□ 0.42
VPS33B-206ENST00000557358 ARFGEF2Q9Y6D5 1785 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 SLX4Q8IY92 1834 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 KSR2Q6VAB6 950 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 DDX46Q7L014 1031 aaKnown RBP17.66■□□□□ 0.42
VPS33B-206ENST00000557358 CCDC191Q8NCU4 936 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 CRAMP1Q96RY5 1269 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 MYD88Q99836 296 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 KDM2BQ8NHM5 1336 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 ADCY9O60503 1353 aa17.66■□□□□ 0.42
VPS33B-206ENST00000557358 TCERG1O14776 1098 aaKnown RBP17.65■□□□□ 0.42
VPS33B-206ENST00000557358 HOXA10P31260 410 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-206ENST00000557358 RASSF7Q02833 373 aa17.65■□□□□ 0.42
VPS33B-206ENST00000557358 FKBP5Q13451 457 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-206ENST00000557358 METTL22Q9BUU2 404 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-206ENST00000557358 CWC25Q9NXE8 425 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-206ENST00000557358 MAP3K2Q9Y2U5 619 aa17.65■□□□□ 0.42
VPS33B-206ENST00000557358 VAMP4O75379 141 aa17.64■□□□□ 0.41
VPS33B-206ENST00000557358 LTBP3Q9NS15 1303 aa17.64■□□□□ 0.41
VPS33B-206ENST00000557358 SBF1O95248 1867 aa17.63■□□□□ 0.41
VPS33B-206ENST00000557358 PI4KAP2A4QPH2 592 aa17.63■□□□□ 0.41
VPS33B-206ENST00000557358 HCLS1P14317 486 aaPredicted RBP17.63■□□□□ 0.41
VPS33B-206ENST00000557358 FLIIQ13045 1269 aa17.63■□□□□ 0.41
VPS33B-206ENST00000557358 PI4KAP1Q8N8J0 262 aa17.63■□□□□ 0.41
VPS33B-206ENST00000557358 ZBTB38Q8NAP3 1195 aaPredicted RBP17.63■□□□□ 0.41
VPS33B-206ENST00000557358 FAM89AQ96GI7 184 aa17.63■□□□□ 0.41
VPS33B-206ENST00000557358 IRS4O14654 1257 aaPredicted RBP17.62■□□□□ 0.41
VPS33B-206ENST00000557358 PPEF1O14829 653 aaPredicted RBP17.62■□□□□ 0.41
VPS33B-206ENST00000557358 DPY19L2Q6NUT2 758 aa17.62■□□□□ 0.41
VPS33B-206ENST00000557358 ZNF521Q96K83 1311 aa17.62■□□□□ 0.41
VPS33B-206ENST00000557358 TNRC6CQ9HCJ0 1690 aaKnown RBP17.61■□□□□ 0.41
VPS33B-206ENST00000557358 CCDC88AQ3V6T2 1871 aa17.61■□□□□ 0.41
VPS33B-206ENST00000557358 NFKBIEO00221 500 aa17.61■□□□□ 0.41
VPS33B-206ENST00000557358 BBOX1O75936 387 aa17.61■□□□□ 0.41
VPS33B-206ENST00000557358 FKBP4Q02790 459 aaKnown RBP eCLIP17.61■□□□□ 0.41
VPS33B-206ENST00000557358 TMC4Q7Z404 712 aa17.61■□□□□ 0.41
VPS33B-206ENST00000557358 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
VPS33B-206ENST00000557358 FER1L6Q2WGJ9 1857 aa17.61■□□□□ 0.41
VPS33B-206ENST00000557358 PCCAP05165 728 aaPredicted RBP17.6■□□□□ 0.41
VPS33B-206ENST00000557358 RTL5Q5HYW3 569 aaPredicted RBP17.6■□□□□ 0.41
VPS33B-206ENST00000557358 C16orf71Q8IYS4 520 aaPredicted RBP17.6■□□□□ 0.41
VPS33B-206ENST00000557358 C7orf43Q8WVR3 580 aa17.6■□□□□ 0.41
VPS33B-206ENST00000557358 ZNF428Q96B54 188 aa17.6■□□□□ 0.41
VPS33B-206ENST00000557358 DNAAF4Q8WXU2 420 aa17.59■□□□□ 0.41
VPS33B-206ENST00000557358 GRAPQ13588 217 aa17.58■□□□□ 0.4
VPS33B-206ENST00000557358 SF3B3Q15393 1217 aaKnown RBP17.58■□□□□ 0.4
VPS33B-206ENST00000557358 CCDC152Q4G0S7 254 aa17.58■□□□□ 0.4
VPS33B-206ENST00000557358 SUPT20HQ8NEM7 779 aa17.58■□□□□ 0.4
VPS33B-206ENST00000557358 GRAPLQ8TC17 118 aaPredicted RBP17.58■□□□□ 0.4
VPS33B-206ENST00000557358 JDP2Q8WYK2 163 aa17.58■□□□□ 0.4
VPS33B-206ENST00000557358 PSMD1Q99460 953 aa17.58■□□□□ 0.4
VPS33B-206ENST00000557358 ABCC4O15439 1325 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 PDE8AO60658 829 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 SLFN5Q08AF3 891 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 C3orf67Q6ZVT6 689 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 G2E3Q7L622 706 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 SYNE4Q8N205 404 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 ATP6V0A2Q9Y487 856 aa17.57■□□□□ 0.4
VPS33B-206ENST00000557358 DICER1Q9UPY3 1922 aaKnown RBP17.57■□□□□ 0.4
VPS33B-206ENST00000557358 GLTPD2A6NH11 291 aa17.56■□□□□ 0.4
VPS33B-206ENST00000557358 NEURL1BA8MQ27 555 aa17.55■□□□□ 0.4
VPS33B-206ENST00000557358 CT47B1P0C2W7 299 aaPredicted RBP17.55■□□□□ 0.4
VPS33B-206ENST00000557358 IARSP41252 1262 aaKnown RBP17.55■□□□□ 0.4
VPS33B-206ENST00000557358 C1QTNF8P60827 252 aa17.55■□□□□ 0.4
VPS33B-206ENST00000557358 SP8Q8IXZ3 490 aa17.55■□□□□ 0.4
VPS33B-206ENST00000557358 LINS1Q8NG48 757 aa17.55■□□□□ 0.4
VPS33B-206ENST00000557358 ZNF277Q9NRM2 450 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms