RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ERFEQ4G0M1 354 aa16.02■□□□□ 0.16
SLIRP-209ENST00000557342 NLRP10Q86W26 655 aa16.02■□□□□ 0.16
SLIRP-209ENST00000557342 NUTM1Q86Y26 1132 aa16.02■□□□□ 0.16
SLIRP-209ENST00000557342 CNKSR1Q969H4 720 aa16.02■□□□□ 0.16
SLIRP-209ENST00000557342 NPR1P16066 1061 aa16.01■□□□□ 0.15
SLIRP-209ENST00000557342 SLFN5Q08AF3 891 aa16.01■□□□□ 0.15
SLIRP-209ENST00000557342 ISCA1Q9BUE6 129 aa16.01■□□□□ 0.15
SLIRP-209ENST00000557342 SLX4Q8IY92 1834 aa16.01■□□□□ 0.15
SLIRP-209ENST00000557342 ABCC12Q96J65 1359 aa16■□□□□ 0.15
SLIRP-209ENST00000557342 LAMB2P55268 1798 aa16■□□□□ 0.15
SLIRP-209ENST00000557342 TCERG1O14776 1098 aaKnown RBP16■□□□□ 0.15
SLIRP-209ENST00000557342 TRIM28Q13263 835 aaKnown RBP16■□□□□ 0.15
SLIRP-209ENST00000557342 ARHGAP27Q6ZUM4 889 aa16■□□□□ 0.15
SLIRP-209ENST00000557342 SBF1O95248 1867 aa15.99■□□□□ 0.15
SLIRP-209ENST00000557342 CCDC88AQ3V6T2 1871 aa15.99■□□□□ 0.15
SLIRP-209ENST00000557342 SLC10A5Q5PT55 438 aa15.99■□□□□ 0.15
SLIRP-209ENST00000557342 KSR2Q6VAB6 950 aa15.99■□□□□ 0.15
SLIRP-209ENST00000557342 TRMT112Q9UI30 125 aaKnown RBP15.99■□□□□ 0.15
SLIRP-209ENST00000557342 DDX60Q8IY21 1712 aaKnown RBP15.99■□□□□ 0.15
SLIRP-209ENST00000557342 SH3TC1Q8TE82 1336 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 ATP5J2-PTCD1G3V325 749 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 ALDH1B1P30837 517 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 FER1L6Q2WGJ9 1857 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 NLRP3Q96P20 1036 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 MYD88Q99836 296 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 METTL22Q9BUU2 404 aaPredicted RBP15.98■□□□□ 0.15
SLIRP-209ENST00000557342 MAP3K2Q9Y2U5 619 aa15.98■□□□□ 0.15
SLIRP-209ENST00000557342 PI4KAP2A4QPH2 592 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 NEXNQ0ZGT2 675 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 FLIIQ13045 1269 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 CRY2Q49AN0 593 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 PI4KAP1Q8N8J0 262 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 CCDC191Q8NCU4 936 aa15.97■□□□□ 0.15
SLIRP-209ENST00000557342 RPGRQ92834 1020 aaKnown RBP15.97■□□□□ 0.15
SLIRP-209ENST00000557342 HSP90B1P14625 803 aaKnown RBP15.96■□□□□ 0.15
SLIRP-209ENST00000557342 FKBP5Q13451 457 aaPredicted RBP15.96■□□□□ 0.15
SLIRP-209ENST00000557342 SOGA3Q5TF21 947 aa15.96■□□□□ 0.15
SLIRP-209ENST00000557342 PRPF40BQ6NWY9 871 aaKnown RBP15.96■□□□□ 0.15
SLIRP-209ENST00000557342 G2E3Q7L622 706 aa15.96■□□□□ 0.15
SLIRP-209ENST00000557342 TRMT2AQ8IZ69 625 aaKnown RBP15.96■□□□□ 0.15
SLIRP-209ENST00000557342 ZNF428Q96B54 188 aa15.96■□□□□ 0.15
SLIRP-209ENST00000557342 CDCA7LQ96GN5 454 aa15.96■□□□□ 0.15
SLIRP-209ENST00000557342 RBM17Q96I25 401 aaKnown RBP15.96■□□□□ 0.15
SLIRP-209ENST00000557342 GOLGB1Q14789 3259 aaKnown RBP15.95■□□□□ 0.14
SLIRP-209ENST00000557342 CWC25Q9NXE8 425 aaPredicted RBP15.95■□□□□ 0.14
SLIRP-209ENST00000557342 ADCY9O60503 1353 aa15.95■□□□□ 0.14
SLIRP-209ENST00000557342 UTRNP46939 3433 aa15.95■□□□□ 0.14
SLIRP-209ENST00000557342 MYH3P11055 1940 aa15.94■□□□□ 0.14
SLIRP-209ENST00000557342 DICER1Q9UPY3 1922 aaKnown RBP15.94■□□□□ 0.14
SLIRP-209ENST00000557342 C21orf2O43822 256 aa15.94■□□□□ 0.14
SLIRP-209ENST00000557342 HOXA10P31260 410 aaPredicted RBP15.94■□□□□ 0.14
SLIRP-209ENST00000557342 HNRNPUQ00839 825 aaKnown RBP eCLIP15.94■□□□□ 0.14
SLIRP-209ENST00000557342 ZBTB38Q8NAP3 1195 aaPredicted RBP15.94■□□□□ 0.14
SLIRP-209ENST00000557342 CRAMP1Q96RY5 1269 aa15.94■□□□□ 0.14
SLIRP-209ENST00000557342 CT47B1P0C2W7 299 aaPredicted RBP15.93■□□□□ 0.14
SLIRP-209ENST00000557342 HCLS1P14317 486 aaPredicted RBP15.93■□□□□ 0.14
SLIRP-209ENST00000557342 DNAAF4Q8WXU2 420 aa15.93■□□□□ 0.14
SLIRP-209ENST00000557342 FAM89AQ96GI7 184 aa15.93■□□□□ 0.14
SLIRP-209ENST00000557342 PCCAP05165 728 aaPredicted RBP15.92■□□□□ 0.14
SLIRP-209ENST00000557342 SYNE4Q8N205 404 aa15.92■□□□□ 0.14
SLIRP-209ENST00000557342 ZNF219Q9P2Y4 722 aaPredicted RBP15.92■□□□□ 0.14
SLIRP-209ENST00000557342 IRS4O14654 1257 aaPredicted RBP15.91■□□□□ 0.14
SLIRP-209ENST00000557342 CCDC93Q567U6 631 aa15.91■□□□□ 0.14
SLIRP-209ENST00000557342 C3orf67Q6ZVT6 689 aa15.91■□□□□ 0.14
SLIRP-209ENST00000557342 NEURL1BA8MQ27 555 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 IGKV5-2P06315 115 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 ALDH1L2Q3SY69 923 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 GRIPAP1Q4V328 841 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 C9orf131Q5VYM1 1079 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 CC2D2BQ6DHV5 1058 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 DDX46Q7L014 1031 aaKnown RBP15.9■□□□□ 0.14
SLIRP-209ENST00000557342 RTKN2Q8IZC4 609 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 ZNF784Q8NCA9 323 aaPredicted RBP15.9■□□□□ 0.14
SLIRP-209ENST00000557342 C7orf43Q8WVR3 580 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 TAF1P21675 1872 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 LTBP3Q9NS15 1303 aa15.9■□□□□ 0.14
SLIRP-209ENST00000557342 TIAM2Q8IVF5 1701 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 NFKBIEO00221 500 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 LMNB1P20700 586 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 RASSF7Q02833 373 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 SF3B3Q15393 1217 aaKnown RBP15.89■□□□□ 0.13
SLIRP-209ENST00000557342 RTL5Q5HYW3 569 aaPredicted RBP15.89■□□□□ 0.13
SLIRP-209ENST00000557342 MRPL50Q8N5N7 158 aaKnown RBP15.89■□□□□ 0.13
SLIRP-209ENST00000557342 LINS1Q8NG48 757 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 TMX4Q9H1E5 349 aaPredicted RBP15.89■□□□□ 0.13
SLIRP-209ENST00000557342 TAOK3Q9H2K8 898 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 RNF181Q9P0P0 153 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 PTPRCP08575 1304 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 CDHR2Q9BYE9 1310 aa15.89■□□□□ 0.13
SLIRP-209ENST00000557342 PPEF1O14829 653 aaPredicted RBP15.88■□□□□ 0.13
SLIRP-209ENST00000557342 PDE8AO60658 829 aa15.88■□□□□ 0.13
SLIRP-209ENST00000557342 BBOX1O75936 387 aa15.88■□□□□ 0.13
SLIRP-209ENST00000557342 CWF19L2Q2TBE0 894 aaKnown RBP15.88■□□□□ 0.13
SLIRP-209ENST00000557342 ABCC4O15439 1325 aa15.88■□□□□ 0.13
SLIRP-209ENST00000557342 GCKRQ14397 625 aa15.87■□□□□ 0.13
SLIRP-209ENST00000557342 TMC4Q7Z404 712 aa15.87■□□□□ 0.13
SLIRP-209ENST00000557342 SSH1Q8WYL5 1049 aa15.87■□□□□ 0.13
SLIRP-209ENST00000557342 ZBED9Q6R2W3 1325 aa15.87■□□□□ 0.13
SLIRP-209ENST00000557342 ZC3H4Q9UPT8 1303 aaKnown RBP15.87■□□□□ 0.13
SLIRP-209ENST00000557342 F6X3S4 739 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms