RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PIM2Q9P1W9 311 aa17.37■□□□□ 0.37
SHMT2-228ENST00000557302 MAP3K2Q9Y2U5 619 aa17.37■□□□□ 0.37
SHMT2-228ENST00000557302 RNF123Q5XPI4 1314 aa17.37■□□□□ 0.37
SHMT2-228ENST00000557302 METTL22Q9BUU2 404 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-228ENST00000557302 ADCY9O60503 1353 aa17.36■□□□□ 0.37
SHMT2-228ENST00000557302 ANKRD36CQ5JPF3 1778 aa17.35■□□□□ 0.37
SHMT2-228ENST00000557302 N4BP2Q86UW6 1770 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-228ENST00000557302 ARFGEF2Q9Y6D5 1785 aa17.35■□□□□ 0.37
SHMT2-228ENST00000557302 YBX3P16989 372 aaKnown RBP eCLIP17.35■□□□□ 0.37
SHMT2-228ENST00000557302 TRIM28Q13263 835 aaKnown RBP17.35■□□□□ 0.37
SHMT2-228ENST00000557302 TRMT112Q9UI30 125 aaKnown RBP17.35■□□□□ 0.37
SHMT2-228ENST00000557302 ABCC12Q96J65 1359 aa17.35■□□□□ 0.37
SHMT2-228ENST00000557302 GRIN3BO60391 1043 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 CACNA1FO60840 1977 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 NEXNQ0ZGT2 675 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 ALDH1L2Q3SY69 923 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 DALRD3Q5D0E6 543 aaKnown RBP17.34■□□□□ 0.37
SHMT2-228ENST00000557302 ANKRD31Q8N7Z5 1873 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 SSH1Q8WYL5 1049 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 BCS1LQ9Y276 419 aa17.34■□□□□ 0.37
SHMT2-228ENST00000557302 RIC1Q4ADV7 1423 aa17.33■□□□□ 0.36
SHMT2-228ENST00000557302 SH3TC1Q8TE82 1336 aa17.33■□□□□ 0.36
SHMT2-228ENST00000557302 KLRG2A4D1S0 409 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-228ENST00000557302 MRPL50Q8N5N7 158 aaKnown RBP17.33■□□□□ 0.36
SHMT2-228ENST00000557302 DNAAF4Q8WXU2 420 aa17.33■□□□□ 0.36
SHMT2-228ENST00000557302 SRGNP10124 158 aa17.32■□□□□ 0.36
SHMT2-228ENST00000557302 TTLL6Q8N841 843 aa17.32■□□□□ 0.36
SHMT2-228ENST00000557302 CCDC191Q8NCU4 936 aa17.32■□□□□ 0.36
SHMT2-228ENST00000557302 ZNF622Q969S3 477 aaKnown RBP eCLIP17.32■□□□□ 0.36
SHMT2-228ENST00000557302 MASTLQ96GX5 879 aa17.32■□□□□ 0.36
SHMT2-228ENST00000557302 SMC4Q9NTJ3 1288 aa17.32■□□□□ 0.36
SHMT2-228ENST00000557302 CWC25Q9NXE8 425 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-228ENST00000557302 SLC10A5Q5PT55 438 aa17.31■□□□□ 0.36
SHMT2-228ENST00000557302 STYK1Q6J9G0 422 aa17.31■□□□□ 0.36
SHMT2-228ENST00000557302 BCL2L13Q9BXK5 485 aa17.31■□□□□ 0.36
SHMT2-228ENST00000557302 IGKV5-2P06315 115 aa17.3■□□□□ 0.36
SHMT2-228ENST00000557302 NPR1P16066 1061 aa17.3■□□□□ 0.36
SHMT2-228ENST00000557302 SYNE4Q8N205 404 aa17.3■□□□□ 0.36
SHMT2-228ENST00000557302 FAM89AQ96GI7 184 aa17.3■□□□□ 0.36
SHMT2-228ENST00000557302 NLRP3Q96P20 1036 aa17.3■□□□□ 0.36
SHMT2-228ENST00000557302 BRCA1P38398 1863 aaKnown RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 PTPRCP08575 1304 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 NEURL1BA8MQ27 555 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 F6X3S4 739 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 HCLS1P14317 486 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 CRY2Q49AN0 593 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 ZBTB38Q8NAP3 1195 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 RPGRQ92834 1020 aaKnown RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 CNKSR1Q969H4 720 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 DLEC1Q9Y238 1755 aa17.29■□□□□ 0.36
SHMT2-228ENST00000557302 COL11A2P13942 1736 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 TNRC6CQ9HCJ0 1690 aaKnown RBP17.29■□□□□ 0.36
SHMT2-228ENST00000557302 PCCAP05165 728 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-228ENST00000557302 RARSP54136 660 aaKnown RBP17.28■□□□□ 0.36
SHMT2-228ENST00000557302 CWF19L2Q2TBE0 894 aaKnown RBP17.28■□□□□ 0.36
SHMT2-228ENST00000557302 RTL5Q5HYW3 569 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-228ENST00000557302 C3orf67Q6ZVT6 689 aa17.28■□□□□ 0.36
SHMT2-228ENST00000557302 LINS1Q8NG48 757 aa17.28■□□□□ 0.36
SHMT2-228ENST00000557302 IRS4O14654 1257 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-228ENST00000557302 HSP90B1P14625 803 aaKnown RBP17.27■□□□□ 0.36
SHMT2-228ENST00000557302 ALDH1B1P30837 517 aa17.26■□□□□ 0.35
SHMT2-228ENST00000557302 BRPF1P55201 1214 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-228ENST00000557302 BEND3Q5T5X7 828 aa17.26■□□□□ 0.35
SHMT2-228ENST00000557302 PRPF40BQ6NWY9 871 aaKnown RBP17.26■□□□□ 0.35
SHMT2-228ENST00000557302 SLC4A10Q6U841 1118 aa17.26■□□□□ 0.35
SHMT2-228ENST00000557302 HOXA10P31260 410 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-228ENST00000557302 GCKRQ14397 625 aa17.25■□□□□ 0.35
SHMT2-228ENST00000557302 ARHGAP27Q6ZUM4 889 aa17.25■□□□□ 0.35
SHMT2-228ENST00000557302 RBM17Q96I25 401 aaKnown RBP17.25■□□□□ 0.35
SHMT2-228ENST00000557302 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-228ENST00000557302 ARFGEF1Q9Y6D6 1849 aa17.24■□□□□ 0.35
SHMT2-228ENST00000557302 KIF16BQ96L93 1317 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 CDHR2Q9BYE9 1310 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 C21orf2O43822 256 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 ALDH1L1O75891 902 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 UBE3BQ7Z3V4 1068 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 CRAMP1Q96RY5 1269 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 SRCIN1Q9C0H9 1055 aa17.23■□□□□ 0.35
SHMT2-228ENST00000557302 ZNF219Q9P2Y4 722 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-228ENST00000557302 NOB1Q9ULX3 412 aaKnown RBP17.23■□□□□ 0.35
SHMT2-228ENST00000557302 H7C1W4 665 aa17.22■□□□□ 0.35
SHMT2-228ENST00000557302 SF3B3Q15393 1217 aaKnown RBP17.22■□□□□ 0.35
SHMT2-228ENST00000557302 SOGA3Q5TF21 947 aa17.22■□□□□ 0.35
SHMT2-228ENST00000557302 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
SHMT2-228ENST00000557302 API5Q9BZZ5 524 aaKnown RBP17.22■□□□□ 0.35
SHMT2-228ENST00000557302 CHD4Q14839 1912 aa17.21■□□□□ 0.35
SHMT2-228ENST00000557302 PDE8AO60658 829 aa17.21■□□□□ 0.35
SHMT2-228ENST00000557302 DDX60Q8IY21 1712 aaKnown RBP17.21■□□□□ 0.35
SHMT2-228ENST00000557302 ABCC4O15439 1325 aa17.21■□□□□ 0.34
SHMT2-228ENST00000557302 SLX4Q8IY92 1834 aa17.2■□□□□ 0.34
SHMT2-228ENST00000557302 BCAR3O75815 825 aa17.2■□□□□ 0.34
SHMT2-228ENST00000557302 YTHDC1Q96MU7 727 aaKnown RBP17.2■□□□□ 0.34
SHMT2-228ENST00000557302 LAMB2P55268 1798 aa17.2■□□□□ 0.34
SHMT2-228ENST00000557302 GRM8O00222 908 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 PPEF1O14829 653 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-228ENST00000557302 IPO8O15397 1037 aaKnown RBP17.19■□□□□ 0.34
SHMT2-228ENST00000557302 CASP7P55210 303 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 CCDC152Q4G0S7 254 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 CCDC93Q567U6 631 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 ZNF784Q8NCA9 323 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms