RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 RPAP2Q8IXW5 612 aaPredicted RBP29.74■■■□□ 2.35
SIX4-203ENST00000556952 HDAC5Q9UQL6 1122 aa29.73■■■□□ 2.35
SIX4-203ENST00000556952 UTYO14607 1347 aa29.73■■■□□ 2.35
SIX4-203ENST00000556952 USP42Q9H9J4 1324 aaKnown RBP29.73■■■□□ 2.35
SIX4-203ENST00000556952 ERVV-1B6SEH8 477 aa29.73■■■□□ 2.35
SIX4-203ENST00000556952 C9orf78Q9NZ63 289 aaPredicted RBP29.73■■■□□ 2.35
SIX4-203ENST00000556952 GRM8O00222 908 aa29.72■■■□□ 2.35
SIX4-203ENST00000556952 DZIP3Q86Y13 1208 aaKnown RBP29.72■■■□□ 2.35
SIX4-203ENST00000556952 GYS1P13807 737 aa29.71■■■□□ 2.35
SIX4-203ENST00000556952 GCKRQ14397 625 aa29.71■■■□□ 2.35
SIX4-203ENST00000556952 CEP85Q6P2H3 762 aa29.71■■■□□ 2.35
SIX4-203ENST00000556952 ANKRD44Q8N8A2 993 aa29.71■■■□□ 2.35
SIX4-203ENST00000556952 HSP90AB3PQ58FF7 597 aa29.7■■■□□ 2.35
SIX4-203ENST00000556952 GIGYF2Q6Y7W6 1299 aaKnown RBP29.7■■■□□ 2.35
SIX4-203ENST00000556952 A0A087WZG4 1122 aa29.69■■■□□ 2.34
SIX4-203ENST00000556952 NBPF7P0C2Y1 421 aaPredicted RBP29.69■■■□□ 2.34
SIX4-203ENST00000556952 USPL1Q5W0Q7 1092 aa29.69■■■□□ 2.34
SIX4-203ENST00000556952 TCIRG1Q13488 830 aa29.69■■■□□ 2.34
SIX4-203ENST00000556952 ARXQ96QS3 562 aa29.69■■■□□ 2.34
SIX4-203ENST00000556952 NARFQ9UHQ1 456 aa29.69■■■□□ 2.34
SIX4-203ENST00000556952 CCDC191Q8NCU4 936 aa29.68■■■□□ 2.34
SIX4-203ENST00000556952 TBC1D2BQ9UPU7 963 aa29.68■■■□□ 2.34
SIX4-203ENST00000556952 LRRFIP2Q9Y608 721 aaKnown RBP29.68■■■□□ 2.34
SIX4-203ENST00000556952 ATP5J2-PTCD1G3V325 749 aa29.67■■■□□ 2.34
SIX4-203ENST00000556952 TRIM28Q13263 835 aaKnown RBP29.67■■■□□ 2.34
SIX4-203ENST00000556952 SIRT2Q8IXJ6 389 aa29.67■■■□□ 2.34
SIX4-203ENST00000556952 ISCA1Q9BUE6 129 aa29.67■■■□□ 2.34
SIX4-203ENST00000556952 CWC25Q9NXE8 425 aaPredicted RBP29.67■■■□□ 2.34
SIX4-203ENST00000556952 BCL2L12Q9HB09 334 aa29.66■■■□□ 2.34
SIX4-203ENST00000556952 ZPR1O75312 459 aa29.65■■■□□ 2.34
SIX4-203ENST00000556952 HMMRO75330 724 aa29.65■■■□□ 2.34
SIX4-203ENST00000556952 RGL2O15211 777 aa29.64■■■□□ 2.34
SIX4-203ENST00000556952 POLD1P28340 1107 aa29.64■■■□□ 2.34
SIX4-203ENST00000556952 PELP1Q8IZL8 1130 aaKnown RBP29.64■■■□□ 2.34
SIX4-203ENST00000556952 HLFQ16534 295 aa29.63■■■□□ 2.33
SIX4-203ENST00000556952 SMC5Q8IY18 1101 aa29.63■■■□□ 2.33
SIX4-203ENST00000556952 PPP1R1BQ9UD71 204 aaPredicted RBP29.63■■■□□ 2.33
SIX4-203ENST00000556952 CAMTA2O94983 1202 aa29.62■■■□□ 2.33
SIX4-203ENST00000556952 NLGN1Q8N2Q7 840 aa29.62■■■□□ 2.33
SIX4-203ENST00000556952 GCC1Q96CN9 775 aa29.62■■■□□ 2.33
SIX4-203ENST00000556952 MMP10P09238 476 aa29.6■■■□□ 2.33
SIX4-203ENST00000556952 ATP8B2P98198 1209 aa29.6■■■□□ 2.33
SIX4-203ENST00000556952 ZNF652Q9Y2D9 606 aa29.6■■■□□ 2.33
SIX4-203ENST00000556952 MTX1Q13505 466 aa29.59■■■□□ 2.33
SIX4-203ENST00000556952 H7C1W4 665 aa29.58■■■□□ 2.33
SIX4-203ENST00000556952 CLEC4GQ6UXB4 293 aa29.58■■■□□ 2.33
SIX4-203ENST00000556952 SUCLG2Q96I99 432 aa29.58■■■□□ 2.33
SIX4-203ENST00000556952 CASP7P55210 303 aa29.57■■■□□ 2.32
SIX4-203ENST00000556952 UBE3BQ7Z3V4 1068 aa29.57■■■□□ 2.32
SIX4-203ENST00000556952 DDR1Q08345 913 aa29.56■■■□□ 2.32
SIX4-203ENST00000556952 NLRP10Q86W26 655 aa29.56■■■□□ 2.32
SIX4-203ENST00000556952 ZNF34Q8IZ26 560 aa29.56■■■□□ 2.32
SIX4-203ENST00000556952 DCTPP1Q9H773 170 aa29.56■■■□□ 2.32
SIX4-203ENST00000556952 PNMA6EA0A0J9YXQ4 647 aa29.55■■■□□ 2.32
SIX4-203ENST00000556952 TM4SF1P30408 202 aa29.55■■■□□ 2.32
SIX4-203ENST00000556952 SSH3Q8TE77 659 aa29.55■■■□□ 2.32
SIX4-203ENST00000556952 KAZALD1Q96I82 304 aa29.55■■■□□ 2.32
SIX4-203ENST00000556952 PCCAP05165 728 aaPredicted RBP29.54■■■□□ 2.32
SIX4-203ENST00000556952 NFIXQ14938 502 aa29.54■■■□□ 2.32
SIX4-203ENST00000556952 TBC1D9BQ66K14 1250 aa29.54■■■□□ 2.32
SIX4-203ENST00000556952 PPP1R42Q7Z4L9 355 aa29.54■■■□□ 2.32
SIX4-203ENST00000556952 FHDC1Q9C0D6 1143 aaPredicted RBP29.54■■■□□ 2.32
SIX4-203ENST00000556952 NRXN2Q9P2S2 1712 aa29.53■■■□□ 2.32
SIX4-203ENST00000556952 GPTP24298 496 aa29.53■■■□□ 2.32
SIX4-203ENST00000556952 POLA2Q14181 598 aa29.53■■■□□ 2.32
SIX4-203ENST00000556952 ZBTB38Q8NAP3 1195 aaPredicted RBP29.53■■■□□ 2.32
SIX4-203ENST00000556952 BICC1Q9H694 974 aaKnown RBP29.53■■■□□ 2.32
SIX4-203ENST00000556952 PARP10Q53GL7 1025 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 BICDL1Q6ZP65 573 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 KIF13BQ9NQT8 1826 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 UBN2Q6ZU65 1347 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 SRGAP3O43295 1099 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 KLHL34Q8N239 644 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 PDZRN3Q9UPQ7 1066 aa29.52■■■□□ 2.32
SIX4-203ENST00000556952 MYH3P11055 1940 aa29.51■■■□□ 2.31
SIX4-203ENST00000556952 POLRMTO00411 1230 aaKnown RBP29.51■■■□□ 2.31
SIX4-203ENST00000556952 PARP3Q9Y6F1 533 aa29.51■■■□□ 2.31
SIX4-203ENST00000556952 LAMB2P55268 1798 aa29.5■■■□□ 2.31
SIX4-203ENST00000556952 CDHR2Q9BYE9 1310 aa29.5■■■□□ 2.31
SIX4-203ENST00000556952 RABL6Q3YEC7 729 aaPredicted RBP29.5■■■□□ 2.31
SIX4-203ENST00000556952 NUCB1Q02818 461 aa29.49■■■□□ 2.31
SIX4-203ENST00000556952 JARID2Q92833 1246 aaPredicted RBP29.47■■■□□ 2.31
SIX4-203ENST00000556952 NIP7Q9Y221 180 aaKnown RBP eCLIP29.47■■■□□ 2.31
SIX4-203ENST00000556952 KIAA1551Q9HCM1 1747 aa29.47■■■□□ 2.31
SIX4-203ENST00000556952 SYT17Q9BSW7 474 aa29.47■■■□□ 2.31
SIX4-203ENST00000556952 PLA2G12BQ9BX93 195 aa29.47■■■□□ 2.31
SIX4-203ENST00000556952 C10orf71Q711Q0 1435 aa29.47■■■□□ 2.31
SIX4-203ENST00000556952 EPHA10Q5JZY3 1008 aa29.46■■■□□ 2.31
SIX4-203ENST00000556952 TRMT112Q9UI30 125 aaKnown RBP29.46■■■□□ 2.31
SIX4-203ENST00000556952 FOXO4P98177 505 aa29.45■■■□□ 2.31
SIX4-203ENST00000556952 CHD1LQ86WJ1 897 aa29.45■■■□□ 2.31
SIX4-203ENST00000556952 SERPINB2P05120 415 aa29.44■■■□□ 2.3
SIX4-203ENST00000556952 RTL5Q5HYW3 569 aaPredicted RBP29.44■■■□□ 2.3
SIX4-203ENST00000556952 FAM89AQ96GI7 184 aa29.44■■■□□ 2.3
SIX4-203ENST00000556952 CARMIL3Q8ND23 1372 aa29.44■■■□□ 2.3
SIX4-203ENST00000556952 ANKRD45Q5TZF3 282 aa29.43■■■□□ 2.3
SIX4-203ENST00000556952 NLGN2Q8NFZ4 835 aa29.43■■■□□ 2.3
SIX4-203ENST00000556952 UTP14AQ9BVJ6 771 aaKnown RBP29.43■■■□□ 2.3
SIX4-203ENST00000556952 DDX60Q8IY21 1712 aaKnown RBP29.43■■■□□ 2.3
SIX4-203ENST00000556952 HSP90AB4PQ58FF6 505 aa29.43■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms