RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 UTP14AQ9BVJ6 771 aaKnown RBP29.4■■■□□ 2.3
TDP1-216ENST00000556867 CACNA1SQ13698 1873 aa29.38■■■□□ 2.29
TDP1-216ENST00000556867 TCERG1O14776 1098 aaKnown RBP29.38■■■□□ 2.29
TDP1-216ENST00000556867 RIC3Q7Z5B4 369 aa29.38■■■□□ 2.29
TDP1-216ENST00000556867 ISCA1Q9BUE6 129 aa29.38■■■□□ 2.29
TDP1-216ENST00000556867 E9PSI1 815 aa29.37■■■□□ 2.29
TDP1-216ENST00000556867 DDX58O95786 925 aaKnown RBP29.37■■■□□ 2.29
TDP1-216ENST00000556867 ARHGAP27Q6ZUM4 889 aa29.37■■■□□ 2.29
TDP1-216ENST00000556867 CNKSR1Q969H4 720 aa29.37■■■□□ 2.29
TDP1-216ENST00000556867 SLX4Q8IY92 1834 aa29.36■■■□□ 2.29
TDP1-216ENST00000556867 NPR1P16066 1061 aa29.36■■■□□ 2.29
TDP1-216ENST00000556867 CRY2Q49AN0 593 aa29.36■■■□□ 2.29
TDP1-216ENST00000556867 SLC4A2P04920 1241 aa29.35■■■□□ 2.29
TDP1-216ENST00000556867 TRIM28Q13263 835 aaKnown RBP29.35■■■□□ 2.29
TDP1-216ENST00000556867 SLC10A5Q5PT55 438 aa29.34■■■□□ 2.29
TDP1-216ENST00000556867 ATP5J2-PTCD1G3V325 749 aa29.33■■■□□ 2.29
TDP1-216ENST00000556867 SLFN5Q08AF3 891 aa29.33■■■□□ 2.29
TDP1-216ENST00000556867 ADCY9O60503 1353 aa29.32■■■□□ 2.28
TDP1-216ENST00000556867 SH3TC1Q8TE82 1336 aa29.32■■■□□ 2.28
TDP1-216ENST00000556867 PRPF40BQ6NWY9 871 aaKnown RBP29.32■■■□□ 2.28
TDP1-216ENST00000556867 KSR2Q6VAB6 950 aa29.32■■■□□ 2.28
TDP1-216ENST00000556867 G2E3Q7L622 706 aa29.32■■■□□ 2.28
TDP1-216ENST00000556867 TRMT112Q9UI30 125 aaKnown RBP29.32■■■□□ 2.28
TDP1-216ENST00000556867 METTL22Q9BUU2 404 aaPredicted RBP29.31■■■□□ 2.28
TDP1-216ENST00000556867 LAMB2P55268 1798 aa29.31■■■□□ 2.28
TDP1-216ENST00000556867 FLIIQ13045 1269 aa29.3■■■□□ 2.28
TDP1-216ENST00000556867 MYD88Q99836 296 aa29.3■■■□□ 2.28
TDP1-216ENST00000556867 MAP3K2Q9Y2U5 619 aa29.3■■■□□ 2.28
TDP1-216ENST00000556867 SBF1O95248 1867 aa29.29■■■□□ 2.28
TDP1-216ENST00000556867 PI4KAP2A4QPH2 592 aa29.29■■■□□ 2.28
TDP1-216ENST00000556867 PI4KAP1Q8N8J0 262 aa29.29■■■□□ 2.28
TDP1-216ENST00000556867 DDX60Q8IY21 1712 aaKnown RBP29.28■■■□□ 2.28
TDP1-216ENST00000556867 FER1L6Q2WGJ9 1857 aa29.28■■■□□ 2.28
TDP1-216ENST00000556867 HOXA10P31260 410 aaPredicted RBP29.28■■■□□ 2.28
TDP1-216ENST00000556867 C3orf67Q6ZVT6 689 aa29.28■■■□□ 2.28
TDP1-216ENST00000556867 CDCA7LQ96GN5 454 aa29.28■■■□□ 2.28
TDP1-216ENST00000556867 NLRP3Q96P20 1036 aa29.28■■■□□ 2.28
TDP1-216ENST00000556867 C21orf2O43822 256 aa29.27■■■□□ 2.28
TDP1-216ENST00000556867 ALDH1B1P30837 517 aa29.27■■■□□ 2.28
TDP1-216ENST00000556867 SYNE4Q8N205 404 aa29.27■■■□□ 2.28
TDP1-216ENST00000556867 ZNF784Q8NCA9 323 aaPredicted RBP29.27■■■□□ 2.28
TDP1-216ENST00000556867 RPGRQ92834 1020 aaKnown RBP29.27■■■□□ 2.28
TDP1-216ENST00000556867 TRMT2AQ8IZ69 625 aaKnown RBP29.26■■■□□ 2.27
TDP1-216ENST00000556867 CCDC191Q8NCU4 936 aa29.26■■■□□ 2.27
TDP1-216ENST00000556867 HCLS1P14317 486 aaPredicted RBP29.25■■■□□ 2.27
TDP1-216ENST00000556867 SOGA3Q5TF21 947 aa29.25■■■□□ 2.27
TDP1-216ENST00000556867 C7orf43Q8WVR3 580 aa29.25■■■□□ 2.27
TDP1-216ENST00000556867 ZNF428Q96B54 188 aa29.25■■■□□ 2.27
TDP1-216ENST00000556867 FKBP5Q13451 457 aaPredicted RBP29.24■■■□□ 2.27
TDP1-216ENST00000556867 FAM89AQ96GI7 184 aa29.24■■■□□ 2.27
TDP1-216ENST00000556867 CRAMP1Q96RY5 1269 aa29.24■■■□□ 2.27
TDP1-216ENST00000556867 ZNF219Q9P2Y4 722 aaPredicted RBP29.24■■■□□ 2.27
TDP1-216ENST00000556867 NFKBIEO00221 500 aa29.23■■■□□ 2.27
TDP1-216ENST00000556867 RASSF7Q02833 373 aa29.23■■■□□ 2.27
TDP1-216ENST00000556867 RBM17Q96I25 401 aaKnown RBP29.23■■■□□ 2.27
TDP1-216ENST00000556867 CWC25Q9NXE8 425 aaPredicted RBP29.23■■■□□ 2.27
TDP1-216ENST00000556867 NEXNQ0ZGT2 675 aa29.22■■■□□ 2.27
TDP1-216ENST00000556867 C9orf131Q5VYM1 1079 aa29.22■■■□□ 2.27
TDP1-216ENST00000556867 ZBTB38Q8NAP3 1195 aaPredicted RBP29.22■■■□□ 2.27
TDP1-216ENST00000556867 IGKV5-2P06315 115 aa29.21■■■□□ 2.27
TDP1-216ENST00000556867 LTBP3Q9NS15 1303 aa29.2■■■□□ 2.27
TDP1-216ENST00000556867 PCCAP05165 728 aaPredicted RBP29.2■■■□□ 2.26
TDP1-216ENST00000556867 CCDC88AQ3V6T2 1871 aa29.2■■■□□ 2.26
TDP1-216ENST00000556867 CCDC93Q567U6 631 aa29.19■■■□□ 2.26
TDP1-216ENST00000556867 DNAAF4Q8WXU2 420 aa29.19■■■□□ 2.26
TDP1-216ENST00000556867 RNF181Q9P0P0 153 aa29.19■■■□□ 2.26
TDP1-216ENST00000556867 IRS4O14654 1257 aaPredicted RBP29.18■■■□□ 2.26
TDP1-216ENST00000556867 LMNB1P20700 586 aa29.18■■■□□ 2.26
TDP1-216ENST00000556867 RTL5Q5HYW3 569 aaPredicted RBP29.18■■■□□ 2.26
TDP1-216ENST00000556867 NEURL1BA8MQ27 555 aa29.17■■■□□ 2.26
TDP1-216ENST00000556867 PRELPP51888 382 aa29.17■■■□□ 2.26
TDP1-216ENST00000556867 TAOK3Q9H2K8 898 aa29.17■■■□□ 2.26
TDP1-216ENST00000556867 ABCC4O15439 1325 aa29.17■■■□□ 2.26
TDP1-216ENST00000556867 HSP90B1P14625 803 aaKnown RBP29.16■■■□□ 2.26
TDP1-216ENST00000556867 HNRNPUQ00839 825 aaKnown RBP eCLIP29.16■■■□□ 2.26
TDP1-216ENST00000556867 SF3B3Q15393 1217 aaKnown RBP29.16■■■□□ 2.26
TDP1-216ENST00000556867 CWF19L2Q2TBE0 894 aaKnown RBP29.16■■■□□ 2.26
TDP1-216ENST00000556867 SNED1Q8TER0 1413 aa29.16■■■□□ 2.26
TDP1-216ENST00000556867 DICER1Q9UPY3 1922 aaKnown RBP29.16■■■□□ 2.26
TDP1-216ENST00000556867 CT47B1P0C2W7 299 aaPredicted RBP29.15■■■□□ 2.26
TDP1-216ENST00000556867 TIAM2Q8IVF5 1701 aa29.14■■■□□ 2.26
TDP1-216ENST00000556867 PPEF1O14829 653 aaPredicted RBP29.14■■■□□ 2.26
TDP1-216ENST00000556867 CC2D2BQ6DHV5 1058 aa29.14■■■□□ 2.26
TDP1-216ENST00000556867 OLFM4Q6UX06 510 aa29.14■■■□□ 2.26
TDP1-216ENST00000556867 RTKN2Q8IZC4 609 aa29.14■■■□□ 2.26
TDP1-216ENST00000556867 MRPL50Q8N5N7 158 aaKnown RBP29.14■■■□□ 2.26
TDP1-216ENST00000556867 LINS1Q8NG48 757 aa29.14■■■□□ 2.26
TDP1-216ENST00000556867 CDHR2Q9BYE9 1310 aa29.14■■■□□ 2.25
TDP1-216ENST00000556867 DDX46Q7L014 1031 aaKnown RBP29.13■■■□□ 2.25
TDP1-216ENST00000556867 ZC3H4Q9UPT8 1303 aaKnown RBP29.13■■■□□ 2.25
TDP1-216ENST00000556867 TAF1P21675 1872 aa29.12■■■□□ 2.25
TDP1-216ENST00000556867 F6X3S4 739 aa29.12■■■□□ 2.25
TDP1-216ENST00000556867 ALDH1L2Q3SY69 923 aa29.12■■■□□ 2.25
TDP1-216ENST00000556867 SSH1Q8WYL5 1049 aa29.12■■■□□ 2.25
TDP1-216ENST00000556867 FKBP4Q02790 459 aaKnown RBP eCLIP29.11■■■□□ 2.25
TDP1-216ENST00000556867 GRAPQ13588 217 aa29.11■■■□□ 2.25
TDP1-216ENST00000556867 GCKRQ14397 625 aa29.11■■■□□ 2.25
TDP1-216ENST00000556867 GRAPLQ8TC17 118 aaPredicted RBP29.11■■■□□ 2.25
TDP1-216ENST00000556867 MYH3P11055 1940 aa29.11■■■□□ 2.25
TDP1-216ENST00000556867 PDE8AO60658 829 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms