RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NTSR2O95665 410 aa14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 MRPL50Q8N5N7 158 aaKnown RBP14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 ZNF622Q969S3 477 aaKnown RBP eCLIP14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 PIM2Q9P1W9 311 aa14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 BCS1LQ9Y276 419 aa14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 ADCY9O60503 1353 aa14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 IBTKQ9P2D0 1353 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-212ENST00000556767 ALDH1L2Q3SY69 923 aa14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 RTL5Q5HYW3 569 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 DNAAF4Q8WXU2 420 aa14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 SH3TC1Q8TE82 1336 aa14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 ANKRD31Q8N7Z5 1873 aa14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 ABCC12Q96J65 1359 aa14.59□□□□□ -0.07
CCDC88C-212ENST00000556767 F6X3S4 739 aa14.58□□□□□ -0.08
CCDC88C-212ENST00000556767 CWC25Q9NXE8 425 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-212ENST00000556767 PDZRN3Q9UPQ7 1066 aa14.58□□□□□ -0.08
CCDC88C-212ENST00000556767 KIAA1551Q9HCM1 1747 aa14.58□□□□□ -0.08
CCDC88C-212ENST00000556767 YBX3P16989 372 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 KCNA3P22001 575 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 TRIM28Q13263 835 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 CWF19L2Q2TBE0 894 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 DALRD3Q5D0E6 543 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 SLC4A10Q6U841 1118 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 SYNE4Q8N205 404 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 CCDC191Q8NCU4 936 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 FAM89AQ96GI7 184 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 RNF123Q5XPI4 1314 aa14.57□□□□□ -0.08
CCDC88C-212ENST00000556767 HCLS1P14317 486 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-212ENST00000556767 RARSP54136 660 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-212ENST00000556767 JARID2Q92833 1246 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-212ENST00000556767 MASTLQ96GX5 879 aa14.56□□□□□ -0.08
CCDC88C-212ENST00000556767 NLRP3Q96P20 1036 aa14.56□□□□□ -0.08
CCDC88C-212ENST00000556767 NEURL1BA8MQ27 555 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 GRIN3BO60391 1043 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 IGKV5-2P06315 115 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 SRGNP10124 158 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 SLC10A5Q5PT55 438 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 TTLL6Q8N841 843 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 RPGRQ92834 1020 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 PTPRCP08575 1304 aa14.55□□□□□ -0.08
CCDC88C-212ENST00000556767 IRS4O14654 1257 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 NPR1P16066 1061 aa14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 STYK1Q6J9G0 422 aa14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 ZBTB38Q8NAP3 1195 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 LINS1Q8NG48 757 aa14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 CNKSR1Q969H4 720 aa14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 ZNF219Q9P2Y4 722 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 NOB1Q9ULX3 412 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 TNRC6CQ9HCJ0 1690 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 COL11A2P13942 1736 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-212ENST00000556767 PCCAP05165 728 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-212ENST00000556767 C3orf67Q6ZVT6 689 aa14.53□□□□□ -0.08
CCDC88C-212ENST00000556767 DLEC1Q9Y238 1755 aa14.52□□□□□ -0.08
CCDC88C-212ENST00000556767 KLRG2A4D1S0 409 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 BCAR3O75815 825 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 HSP90B1P14625 803 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 GCKRQ14397 625 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 BEND3Q5T5X7 828 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 ARHGAP27Q6ZUM4 889 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 UBE3BQ7Z3V4 1068 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 FRAT1Q92837 279 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 RBM17Q96I25 401 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 SRCIN1Q9C0H9 1055 aa14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 BRCA1P38398 1863 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-212ENST00000556767 RIC1Q4ADV7 1423 aa14.51□□□□□ -0.09
CCDC88C-212ENST00000556767 KIF16BQ96L93 1317 aa14.51□□□□□ -0.09
CCDC88C-212ENST00000556767 ALDH1B1P30837 517 aa14.51□□□□□ -0.09
CCDC88C-212ENST00000556767 CRY2Q49AN0 593 aa14.51□□□□□ -0.09
CCDC88C-212ENST00000556767 API5Q9BZZ5 524 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-212ENST00000556767 CACNA1SQ13698 1873 aa14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 IPO8O15397 1037 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 C21orf2O43822 256 aa14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 BRPF1P55201 1214 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 PRPF40BQ6NWY9 871 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 C9orf78Q9NZ63 289 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-212ENST00000556767 CDHR2Q9BYE9 1310 aa14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 H7C1W4 665 aa14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 PDE8AO60658 829 aa14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 ALDH1L1O75891 902 aa14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 DDX46Q7L014 1031 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 CCDC85AQ96PX6 553 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 DDX60Q8IY21 1712 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-212ENST00000556767 SRCAPQ6ZRS2 3230 aa14.48□□□□□ -0.09
CCDC88C-212ENST00000556767 HOXA10P31260 410 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-212ENST00000556767 CRAMP1Q96RY5 1269 aa14.48□□□□□ -0.09
CCDC88C-212ENST00000556767 SLX4Q8IY92 1834 aa14.48□□□□□ -0.09
CCDC88C-212ENST00000556767 ARFGEF1Q9Y6D6 1849 aa14.48□□□□□ -0.09
CCDC88C-212ENST00000556767 LAMB2P55268 1798 aa14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 GRM8O00222 908 aa14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 SF3B3Q15393 1217 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 ZKSCAN2Q63HK3 967 aa14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 ARHGAP45Q92619 1136 aa14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 TMX4Q9H1E5 349 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-212ENST00000556767 ABCC4O15439 1325 aa14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 PPEF1O14829 653 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 CCT4P50991 539 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 CTSWP56202 376 aa14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 CCDC152Q4G0S7 254 aa14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 SOGA3Q5TF21 947 aa14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 ATF7IPQ6VMQ6 1270 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms