RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 ZNF587Q96SQ5 575 aaPredicted RBP3.54□□□□□ -1.84
NEK9-208ENST00000555961 UBE2OQ9C0C9 1292 aaKnown RBP3.54□□□□□ -1.84
NEK9-208ENST00000555961 IGFLR1Q9H665 355 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 ZBTB7BO15156 539 aaPredicted RBP3.53□□□□□ -1.84
NEK9-208ENST00000555961 LILRB5O75023 590 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 EPB42P16452 691 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 TXKP42681 527 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SEC13P55735 322 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 RAC1P63000 192 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 TYRO3Q06418 890 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 TRAPPC3LQ5T215 181 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SH3PXD2AQ5TCZ1 1133 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 RAB44Q7Z6P3 723 aaPredicted RBP3.53□□□□□ -1.84
NEK9-208ENST00000555961 ALDH16A1Q8IZ83 802 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SIX5Q8N196 739 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 TSEN2Q8NCE0 465 aaKnown RBP3.53□□□□□ -1.84
NEK9-208ENST00000555961 SCG3Q8WXD2 468 aaKnown RBP3.53□□□□□ -1.84
NEK9-208ENST00000555961 VTI1AQ96AJ9 217 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 NGLY1Q96IV0 654 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SUSD3Q96L08 255 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SLC30A3Q99726 388 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 HINFPQ9BQA5 517 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 SEMA6BQ9H3T3 888 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 EFCC1Q9HA90 598 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 KIAA1024Q9UPX6 916 aa3.53□□□□□ -1.84
NEK9-208ENST00000555961 ALBP02768 609 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 KCNQ4P56696 695 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 PCSK7Q16549 785 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 PROSER2Q86WR7 435 aaPredicted RBP3.52□□□□□ -1.85
NEK9-208ENST00000555961 MICALL1Q8N3F8 863 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 STAG2Q8N3U4 1231 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 ADAMTS19Q8TE59 1207 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 GLMNQ92990 594 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 UCN2Q96RP3 112 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 PRDM6Q9NQX0 595 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 HCN2Q9UL51 889 aa3.52□□□□□ -1.85
NEK9-208ENST00000555961 ATAD2Q6PL18 1390 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 SCO2A0A1W2PP80 73 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 C9orf172C9J069 976 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 FAM229AH3BQW9 127 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 ARID4AP29374 1257 aaPredicted RBP3.51□□□□□ -1.85
NEK9-208ENST00000555961 RTN1Q16799 776 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 ZMYM1Q5SVZ6 1142 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 BTLAQ7Z6A9 289 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 ZNF280CQ8ND82 737 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 CALR3Q96L12 384 aaKnown RBP3.51□□□□□ -1.85
NEK9-208ENST00000555961 ARXQ96QS3 562 aa3.51□□□□□ -1.85
NEK9-208ENST00000555961 JPH1Q9HDC5 661 aaPredicted RBP3.51□□□□□ -1.85
NEK9-208ENST00000555961 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.51□□□□□ -1.85
NEK9-208ENST00000555961 TFIP11Q9UBB9 837 aaKnown RBP3.51□□□□□ -1.85
NEK9-208ENST00000555961 TGFBR3LH3BV60 316 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 NRG1Q02297 640 aaPredicted RBP3.5□□□□□ -1.85
NEK9-208ENST00000555961 CCINQ13939 588 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 IER5Q5VY09 327 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 POTEAQ6S8J7 498 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 MDFIQ99750 246 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 C2orf49Q9BVC5 232 aaPredicted RBP3.5□□□□□ -1.85
NEK9-208ENST00000555961 SLC6A14Q9UN76 642 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 STARD13Q9Y3M8 1113 aa3.5□□□□□ -1.85
NEK9-208ENST00000555961 MAFBQ9Y5Q3 323 aaPredicted RBP3.5□□□□□ -1.85
NEK9-208ENST00000555961 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.5□□□□□ -1.85
NEK9-208ENST00000555961 RGS9O75916 674 aaPredicted RBP3.49□□□□□ -1.85
NEK9-208ENST00000555961 ELNP15502 786 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 NFKB1P19838 968 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 IGFBP4P22692 258 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 DPYDQ12882 1025 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 PSAPL1Q6NUJ1 521 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 C8orf86Q6ZUL3 223 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 NBPF11Q86T75 865 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 NUDT8Q8WV74 236 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 C7orf43Q8WVR3 580 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 CLUAP1Q96AJ1 413 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 VRTNQ9H8Y1 702 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 TPSG1Q9NRR2 321 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 DNAJB12Q9NXW2 375 aaKnown RBP3.49□□□□□ -1.85
NEK9-208ENST00000555961 USP21Q9UK80 565 aa3.49□□□□□ -1.85
NEK9-208ENST00000555961 A0A0A0MRY4 1105 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 FAM196BA6NMK8 535 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L15C9J2P7 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L10C9JJH3 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L13C9JLJ4 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L12C9JPN9 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L11C9JVI0 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L21D6R901 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L18D6R9N7 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L22D6RA61 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L17D6RBQ6 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L19D6RCP7 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L20D6RJB6 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 C21orf2O43822 256 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 NID1P14543 1247 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 ARSDP51689 593 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 USP17L24Q0WX57 530 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 GRIK4Q16099 956 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 RSPO4Q2I0M5 234 aaPredicted RBP3.48□□□□□ -1.85
NEK9-208ENST00000555961 C20orf204Q6ZNR8 217 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 FAM35AQ86V20 835 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 ANKMY2Q8IV38 441 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 PPP1R12CQ9BZL4 782 aa3.48□□□□□ -1.85
NEK9-208ENST00000555961 FOXO3O43524 673 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms