RNA–Protein interactions for RNA: ENST00000555497.5

TMEM260-207, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,218 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-207ENST00000555497 FOXO4P98177 505 aa29.41■■■□□ 2.3
TMEM260-207ENST00000555497 PTH1RQ03431 593 aa29.41■■■□□ 2.3
TMEM260-207ENST00000555497 BOLA2Q9H3K6 86 aa29.41■■■□□ 2.3
TMEM260-207ENST00000555497 BRPF3Q9ULD4 1205 aa29.41■■■□□ 2.3
TMEM260-207ENST00000555497 ZDHHC9Q9Y397 364 aa29.41■■■□□ 2.3
TMEM260-207ENST00000555497 CUL4AQ13619 759 aa29.4■■■□□ 2.3
TMEM260-207ENST00000555497 KIAA1211Q6ZU35 1233 aa29.4■■■□□ 2.3
TMEM260-207ENST00000555497 TMOD3Q9NYL9 352 aa29.4■■■□□ 2.3
TMEM260-207ENST00000555497 TFCP2Q12800 502 aa29.4■■■□□ 2.3
TMEM260-207ENST00000555497 LMBR1LQ6UX01 489 aa29.4■■■□□ 2.3
TMEM260-207ENST00000555497 TJP1Q07157 1748 aa29.39■■■□□ 2.3
TMEM260-207ENST00000555497 RUFY2Q8WXA3 655 aa29.39■■■□□ 2.3
TMEM260-207ENST00000555497 ASAP1Q9ULH1 1129 aa29.39■■■□□ 2.3
TMEM260-207ENST00000555497 PIGBQ92521 554 aa29.38■■■□□ 2.29
TMEM260-207ENST00000555497 CWC25Q9NXE8 425 aaPredicted RBP29.38■■■□□ 2.29
TMEM260-207ENST00000555497 FAM227BQ96M60 508 aa29.37■■■□□ 2.29
TMEM260-207ENST00000555497 TNNI3KQ59H18 835 aa29.37■■■□□ 2.29
TMEM260-207ENST00000555497 DBNLQ9UJU6 430 aaKnown RBP29.37■■■□□ 2.29
TMEM260-207ENST00000555497 FPGT-TNNI3KV9GXZ4 949 aa29.37■■■□□ 2.29
TMEM260-207ENST00000555497 NMIQ13287 307 aaPredicted RBP29.35■■■□□ 2.29
TMEM260-207ENST00000555497 FSD2A1L4K1 749 aa29.34■■■□□ 2.29
TMEM260-207ENST00000555497 IL27Q8NEV9 243 aa29.34■■■□□ 2.29
TMEM260-207ENST00000555497 TTC14Q96N46 770 aa29.34■■■□□ 2.29
TMEM260-207ENST00000555497 ITGB4P16144 1822 aa29.34■■■□□ 2.29
TMEM260-207ENST00000555497 EDC3Q96F86 508 aaKnown RBP29.33■■■□□ 2.29
TMEM260-207ENST00000555497 DISP2A7MBM2 1401 aa29.33■■■□□ 2.29
TMEM260-207ENST00000555497 DNAJC10Q8IXB1 793 aa29.33■■■□□ 2.29
TMEM260-207ENST00000555497 ATG3Q9NT62 314 aa29.33■■■□□ 2.29
TMEM260-207ENST00000555497 CCDC191Q8NCU4 936 aa29.32■■■□□ 2.28
TMEM260-207ENST00000555497 CHMP3Q9Y3E7 222 aa29.32■■■□□ 2.28
TMEM260-207ENST00000555497 ROBO1Q9Y6N7 1651 aa29.32■■■□□ 2.28
TMEM260-207ENST00000555497 COL14A1Q05707 1796 aaKnown RBP29.32■■■□□ 2.28
TMEM260-207ENST00000555497 FSD1Q9BTV5 496 aa29.31■■■□□ 2.28
TMEM260-207ENST00000555497 A0A0D9SFI3 127 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 CPA1P15085 419 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 PTMSP20962 102 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 SKOR2Q2VWA4 1001 aaPredicted RBP29.3■■■□□ 2.28
TMEM260-207ENST00000555497 MCTP1Q6DN14 999 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 INTS4Q96HW7 963 aaKnown RBP29.3■■■□□ 2.28
TMEM260-207ENST00000555497 CCDC171Q6TFL3 1326 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 ATP5JP18859 108 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 PRPF40BQ6NWY9 871 aaKnown RBP29.3■■■□□ 2.28
TMEM260-207ENST00000555497 ATG9AQ7Z3C6 839 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 DBNDD2Q9BQY9 259 aa29.3■■■□□ 2.28
TMEM260-207ENST00000555497 HIP1O00291 1037 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 KCNB2Q92953 911 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 ARXQ96QS3 562 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 SNRKQ9NRH2 765 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 ZNF330Q9Y3S2 320 aaPredicted RBP29.29■■■□□ 2.28
TMEM260-207ENST00000555497 NECTIN1Q15223 517 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 ADCK5Q3MIX3 580 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 CHAMP1Q96JM3 812 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 ISCA1Q9BUE6 129 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 NDUFB9Q9Y6M9 179 aa29.29■■■□□ 2.28
TMEM260-207ENST00000555497 COL16A1Q07092 1604 aaPredicted RBP29.29■■■□□ 2.28
TMEM260-207ENST00000555497 GOLGA6L3A6NEY3 463 aa29.28■■■□□ 2.28
TMEM260-207ENST00000555497 GOLGA6L22H0YM25 854 aa29.28■■■□□ 2.28
TMEM260-207ENST00000555497 AK2P54819 239 aa29.28■■■□□ 2.28
TMEM260-207ENST00000555497 KAT6BQ8WYB5 2073 aa29.27■■■□□ 2.28
TMEM260-207ENST00000555497 LARP6Q9BRS8 491 aaKnown RBP29.27■■■□□ 2.28
TMEM260-207ENST00000555497 L1TD1Q5T7N2 865 aaKnown RBP29.26■■■□□ 2.28
TMEM260-207ENST00000555497 FOXD4L5Q5VV16 416 aaPredicted RBP29.26■■■□□ 2.28
TMEM260-207ENST00000555497 VSIG10Q8N0Z9 540 aa29.26■■■□□ 2.28
TMEM260-207ENST00000555497 FOXD4L4Q8WXT5 416 aaPredicted RBP29.26■■■□□ 2.28
TMEM260-207ENST00000555497 MAP4K1Q92918 833 aa29.26■■■□□ 2.28
TMEM260-207ENST00000555497 RBM8AQ9Y5S9 174 aaKnown RBP29.26■■■□□ 2.28
TMEM260-207ENST00000555497 CASTP20810 708 aaKnown RBP29.26■■■□□ 2.27
TMEM260-207ENST00000555497 TCIRG1Q13488 830 aa29.26■■■□□ 2.27
TMEM260-207ENST00000555497 RUFY3Q7L099 469 aa29.26■■■□□ 2.27
TMEM260-207ENST00000555497 ZNF594Q96JF6 807 aaPredicted RBP29.25■■■□□ 2.27
TMEM260-207ENST00000555497 SLC4A9Q96Q91 983 aa29.25■■■□□ 2.27
TMEM260-207ENST00000555497 LMBRD1Q9NUN5 540 aa29.25■■■□□ 2.27
TMEM260-207ENST00000555497 TEX13AQ9BXU3 409 aaPredicted RBP29.24■■■□□ 2.27
TMEM260-207ENST00000555497 MED23Q9ULK4 1368 aa29.24■■■□□ 2.27
TMEM260-207ENST00000555497 BRD1O95696 1058 aa29.24■■■□□ 2.27
TMEM260-207ENST00000555497 XRCC6P12956 609 aaKnown RBP eCLIP29.24■■■□□ 2.27
TMEM260-207ENST00000555497 LRRC24Q50LG9 513 aa29.24■■■□□ 2.27
TMEM260-207ENST00000555497 ZNF589Q86UQ0 364 aaPredicted RBP29.24■■■□□ 2.27
TMEM260-207ENST00000555497 JAKMIP1Q96N16 626 aaKnown RBP29.24■■■□□ 2.27
TMEM260-207ENST00000555497 AHDC1Q5TGY3 1603 aaPredicted RBP29.23■■■□□ 2.27
TMEM260-207ENST00000555497 COL22A1Q8NFW1 1626 aaPredicted RBP29.23■■■□□ 2.27
TMEM260-207ENST00000555497 CREB3L3Q68CJ9 461 aa29.23■■■□□ 2.27
TMEM260-207ENST00000555497 BCL9O00512 1426 aa29.23■■■□□ 2.27
TMEM260-207ENST00000555497 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.23■■■□□ 2.27
TMEM260-207ENST00000555497 CCDC9Q9Y3X0 531 aaKnown RBP29.22■■■□□ 2.27
TMEM260-207ENST00000555497 CHGBP05060 677 aa29.22■■■□□ 2.27
TMEM260-207ENST00000555497 ZSWIM6Q9HCJ5 1215 aa29.22■■■□□ 2.27
TMEM260-207ENST00000555497 COL9A3Q14050 684 aaPredicted RBP29.21■■■□□ 2.27
TMEM260-207ENST00000555497 KLHL40Q2TBA0 621 aa29.21■■■□□ 2.27
TMEM260-207ENST00000555497 HAUS7Q99871 368 aa29.21■■■□□ 2.27
TMEM260-207ENST00000555497 TM6SF1Q9BZW5 370 aa29.21■■■□□ 2.27
TMEM260-207ENST00000555497 LIMCH1Q9UPQ0 1083 aa29.21■■■□□ 2.27
TMEM260-207ENST00000555497 DDX49Q9Y6V7 483 aaKnown RBP29.21■■■□□ 2.27
TMEM260-207ENST00000555497 STARD3NLO95772 234 aa29.2■■■□□ 2.27
TMEM260-207ENST00000555497 TIMM10P62072 90 aa29.2■■■□□ 2.27
TMEM260-207ENST00000555497 DNAJC2Q99543 621 aaKnown RBP29.2■■■□□ 2.27
TMEM260-207ENST00000555497 PUS3Q9BZE2 481 aaKnown RBP29.2■■■□□ 2.27
TMEM260-207ENST00000555497 PLCH1Q4KWH8 1693 aa29.2■■■□□ 2.26
TMEM260-207ENST00000555497 SLC27A2O14975 620 aa29.2■■■□□ 2.26
TMEM260-207ENST00000555497 TRIM28Q13263 835 aaKnown RBP29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms