RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 KIF3CO14782 793 aa27.9■■■□□ 2.06
SYNE2-218ENST00000555241 ALDH1B1P30837 517 aa27.9■■■□□ 2.06
SYNE2-218ENST00000555241 TCIRG1Q13488 830 aa27.89■■■□□ 2.06
SYNE2-218ENST00000555241 PLBD2Q8NHP8 589 aa27.89■■■□□ 2.06
SYNE2-218ENST00000555241 C7orf43Q8WVR3 580 aa27.89■■■□□ 2.06
SYNE2-218ENST00000555241 UTP14AQ9BVJ6 771 aaKnown RBP27.89■■■□□ 2.06
SYNE2-218ENST00000555241 TAOK3Q9H2K8 898 aa27.89■■■□□ 2.06
SYNE2-218ENST00000555241 KDM2BQ8NHM5 1336 aa27.89■■■□□ 2.05
SYNE2-218ENST00000555241 ELL2O00472 640 aaPredicted RBP27.87■■■□□ 2.05
SYNE2-218ENST00000555241 CCDC93Q567U6 631 aa27.87■■■□□ 2.05
SYNE2-218ENST00000555241 ANKRD13DQ6ZTN6 518 aa27.87■■■□□ 2.05
SYNE2-218ENST00000555241 NLRP10Q86W26 655 aa27.87■■■□□ 2.05
SYNE2-218ENST00000555241 C8orf58Q8NAV2 365 aa27.87■■■□□ 2.05
SYNE2-218ENST00000555241 CHMP4AQ9BY43 222 aa27.87■■■□□ 2.05
SYNE2-218ENST00000555241 SENP3-EIF4A1A0A087X0R7 540 aa27.86■■■□□ 2.05
SYNE2-218ENST00000555241 RPGRQ92834 1020 aaKnown RBP27.86■■■□□ 2.05
SYNE2-218ENST00000555241 IL16Q14005 1332 aa27.86■■■□□ 2.05
SYNE2-218ENST00000555241 HOXA10P31260 410 aaPredicted RBP27.85■■■□□ 2.05
SYNE2-218ENST00000555241 SLC10A5Q5PT55 438 aa27.85■■■□□ 2.05
SYNE2-218ENST00000555241 NMRK2Q9NPI5 230 aa27.85■■■□□ 2.05
SYNE2-218ENST00000555241 CACNA1FO60840 1977 aa27.85■■■□□ 2.05
SYNE2-218ENST00000555241 TSR2Q969E8 191 aaKnown RBP27.84■■■□□ 2.05
SYNE2-218ENST00000555241 NLRP3Q96P20 1036 aa27.84■■■□□ 2.05
SYNE2-218ENST00000555241 DDX60Q8IY21 1712 aaKnown RBP27.84■■■□□ 2.05
SYNE2-218ENST00000555241 CCDC30Q5VVM6 783 aa27.82■■■□□ 2.04
SYNE2-218ENST00000555241 RTKN2Q8IZC4 609 aa27.81■■■□□ 2.04
SYNE2-218ENST00000555241 TSPYL6Q8N831 410 aa27.81■■■□□ 2.04
SYNE2-218ENST00000555241 RBM17Q96I25 401 aaKnown RBP27.81■■■□□ 2.04
SYNE2-218ENST00000555241 CRAMP1Q96RY5 1269 aa27.81■■■□□ 2.04
SYNE2-218ENST00000555241 ISCA1Q9BUE6 129 aa27.81■■■□□ 2.04
SYNE2-218ENST00000555241 TRMT112Q9UI30 125 aaKnown RBP27.81■■■□□ 2.04
SYNE2-218ENST00000555241 GLTPD2A6NH11 291 aa27.8■■■□□ 2.04
SYNE2-218ENST00000555241 C3orf67Q6ZVT6 689 aa27.8■■■□□ 2.04
SYNE2-218ENST00000555241 FAM9BQ8IZU0 186 aa27.8■■■□□ 2.04
SYNE2-218ENST00000555241 SH3TC1Q8TE82 1336 aa27.8■■■□□ 2.04
SYNE2-218ENST00000555241 SNED1Q8TER0 1413 aa27.79■■■□□ 2.04
SYNE2-218ENST00000555241 TOMM70O94826 608 aa27.79■■■□□ 2.04
SYNE2-218ENST00000555241 FKBP4Q02790 459 aaKnown RBP eCLIP27.79■■■□□ 2.04
SYNE2-218ENST00000555241 GOLGA2Q08379 1002 aa27.79■■■□□ 2.04
SYNE2-218ENST00000555241 WDR63Q8IWG1 891 aa27.79■■■□□ 2.04
SYNE2-218ENST00000555241 PHAXQ9H814 394 aaKnown RBP27.79■■■□□ 2.04
SYNE2-218ENST00000555241 CC2D2BQ6DHV5 1058 aa27.78■■■□□ 2.04
SYNE2-218ENST00000555241 OLFM4Q6UX06 510 aa27.78■■■□□ 2.04
SYNE2-218ENST00000555241 RIC3Q7Z5B4 369 aa27.78■■■□□ 2.04
SYNE2-218ENST00000555241 WDR90Q96KV7 1748 aa27.78■■■□□ 2.04
SYNE2-218ENST00000555241 TAF1P21675 1872 aa27.76■■■□□ 2.04
SYNE2-218ENST00000555241 TRIM28Q13263 835 aaKnown RBP27.76■■■□□ 2.03
SYNE2-218ENST00000555241 RRAGCQ9HB90 399 aa27.76■■■□□ 2.03
SYNE2-218ENST00000555241 SALL2Q9Y467 1007 aaPredicted RBP27.76■■■□□ 2.03
SYNE2-218ENST00000555241 ATP5J2-PTCD1G3V325 749 aa27.75■■■□□ 2.03
SYNE2-218ENST00000555241 HCLS1P14317 486 aaPredicted RBP27.75■■■□□ 2.03
SYNE2-218ENST00000555241 TWISTNBQ3B726 338 aaPredicted RBP27.75■■■□□ 2.03
SYNE2-218ENST00000555241 DPY19L2Q6NUT2 758 aa27.75■■■□□ 2.03
SYNE2-218ENST00000555241 SYNE4Q8N205 404 aa27.75■■■□□ 2.03
SYNE2-218ENST00000555241 FANCIQ9NVI1 1328 aa27.74■■■□□ 2.03
SYNE2-218ENST00000555241 PPEF1O14829 653 aaPredicted RBP27.74■■■□□ 2.03
SYNE2-218ENST00000555241 GRIPAP1Q4V328 841 aa27.74■■■□□ 2.03
SYNE2-218ENST00000555241 C16orf71Q8IYS4 520 aaPredicted RBP27.74■■■□□ 2.03
SYNE2-218ENST00000555241 DDX58O95786 925 aaKnown RBP27.73■■■□□ 2.03
SYNE2-218ENST00000555241 PSMD1Q99460 953 aa27.73■■■□□ 2.03
SYNE2-218ENST00000555241 STK31Q9BXU1 1019 aa27.73■■■□□ 2.03
SYNE2-218ENST00000555241 ABCC4O15439 1325 aa27.72■■■□□ 2.03
SYNE2-218ENST00000555241 RBM46Q8TBY0 533 aaKnown RBP27.72■■■□□ 2.03
SYNE2-218ENST00000555241 ZNF277Q9NRM2 450 aaPredicted RBP27.72■■■□□ 2.03
SYNE2-218ENST00000555241 CEP350Q5VT06 3117 aa27.7■■■□□ 2.03
SYNE2-218ENST00000555241 VEGFAP15692 232 aaPredicted RBP27.7■■■□□ 2.02
SYNE2-218ENST00000555241 HSPA6P17066 643 aa27.7■■■□□ 2.02
SYNE2-218ENST00000555241 ZNF428Q96B54 188 aa27.7■■■□□ 2.02
SYNE2-218ENST00000555241 FAM89AQ96GI7 184 aa27.7■■■□□ 2.02
SYNE2-218ENST00000555241 SCN4AP35499 1836 aa27.69■■■□□ 2.02
SYNE2-218ENST00000555241 IARSP41252 1262 aaKnown RBP27.69■■■□□ 2.02
SYNE2-218ENST00000555241 MYD88Q99836 296 aa27.69■■■□□ 2.02
SYNE2-218ENST00000555241 DDX46Q7L014 1031 aaKnown RBP27.68■■■□□ 2.02
SYNE2-218ENST00000555241 METTL22Q9BUU2 404 aaPredicted RBP27.68■■■□□ 2.02
SYNE2-218ENST00000555241 TMX4Q9H1E5 349 aaPredicted RBP27.68■■■□□ 2.02
SYNE2-218ENST00000555241 ATP6V0A2Q9Y487 856 aa27.68■■■□□ 2.02
SYNE2-218ENST00000555241 LRRC37AA6NMS7 1700 aa27.67■■■□□ 2.02
SYNE2-218ENST00000555241 BBOX1O75936 387 aa27.67■■■□□ 2.02
SYNE2-218ENST00000555241 CCDC191Q8NCU4 936 aa27.67■■■□□ 2.02
SYNE2-218ENST00000555241 MYH3P11055 1940 aa27.67■■■□□ 2.02
SYNE2-218ENST00000555241 TCERG1O14776 1098 aaKnown RBP27.66■■■□□ 2.02
SYNE2-218ENST00000555241 SF3B3Q15393 1217 aaKnown RBP27.66■■■□□ 2.02
SYNE2-218ENST00000555241 KSR2Q6VAB6 950 aa27.66■■■□□ 2.02
SYNE2-218ENST00000555241 ZBTB38Q8NAP3 1195 aaPredicted RBP27.66■■■□□ 2.02
SYNE2-218ENST00000555241 IRS4O14654 1257 aaPredicted RBP27.65■■■□□ 2.02
SYNE2-218ENST00000555241 GRAPQ13588 217 aa27.65■■■□□ 2.02
SYNE2-218ENST00000555241 GRAPLQ8TC17 118 aaPredicted RBP27.65■■■□□ 2.02
SYNE2-218ENST00000555241 MAP3K2Q9Y2U5 619 aa27.65■■■□□ 2.02
SYNE2-218ENST00000555241 PI4KAP2A4QPH2 592 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 POTECB2RU33 542 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 SLC4A2P04920 1241 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 HSP90B1P14625 803 aaKnown RBP27.64■■■□□ 2.02
SYNE2-218ENST00000555241 EXOSC9Q06265 439 aaKnown RBP27.64■■■□□ 2.02
SYNE2-218ENST00000555241 FSTL1Q12841 308 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 RTL5Q5HYW3 569 aaPredicted RBP27.64■■■□□ 2.02
SYNE2-218ENST00000555241 PI4KAP1Q8N8J0 262 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 MYH16Q9H6N6 1097 aa27.64■■■□□ 2.02
SYNE2-218ENST00000555241 SPINK5Q9NQ38 1064 aaPredicted RBP27.64■■■□□ 2.02
SYNE2-218ENST00000555241 CWC25Q9NXE8 425 aaPredicted RBP27.64■■■□□ 2.02
SYNE2-218ENST00000555241 VAMP4O75379 141 aa27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms