RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ISCA1Q9BUE6 129 aa13.82□□□□□ -0.2
SHMT2-218ENST00000555213 API5Q9BZZ5 524 aaKnown RBP13.82□□□□□ -0.2
SHMT2-218ENST00000555213 FHDC1Q9C0D6 1143 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-218ENST00000555213 NRXN2Q9P2S2 1712 aa13.81□□□□□ -0.2
SHMT2-218ENST00000555213 PXDNLA1KZ92 1463 aa13.81□□□□□ -0.2
SHMT2-218ENST00000555213 TRIM28Q13263 835 aaKnown RBP13.81□□□□□ -0.2
SHMT2-218ENST00000555213 CCDC191Q8NCU4 936 aa13.81□□□□□ -0.2
SHMT2-218ENST00000555213 LINS1Q8NG48 757 aa13.81□□□□□ -0.2
SHMT2-218ENST00000555213 CWC25Q9NXE8 425 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-218ENST00000555213 TRMT112Q9UI30 125 aaKnown RBP13.81□□□□□ -0.2
SHMT2-218ENST00000555213 SH3TC1Q8TE82 1336 aa13.81□□□□□ -0.2
SHMT2-218ENST00000555213 F6X3S4 739 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 NTSR2O95665 410 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 RLBP1P12271 317 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 HSP90B1P14625 803 aaKnown RBP13.8□□□□□ -0.2
SHMT2-218ENST00000555213 PDE6BP35913 854 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 PDE3AQ14432 1141 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 SUSD4Q5VX71 490 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 SLC4A10Q6U841 1118 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 ARHGAP45Q92619 1136 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 FRAT1Q92837 279 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-218ENST00000555213 CRBNQ96SW2 442 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 BRIP1Q9BX63 1249 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 NOB1Q9ULX3 412 aaKnown RBP13.8□□□□□ -0.2
SHMT2-218ENST00000555213 PDZRN3Q9UPQ7 1066 aa13.8□□□□□ -0.2
SHMT2-218ENST00000555213 TGFB2P61812 414 aa13.79□□□□□ -0.2
SHMT2-218ENST00000555213 RIC1Q4ADV7 1423 aa13.79□□□□□ -0.2
SHMT2-218ENST00000555213 AFDNP55196 1824 aaKnown RBP13.78□□□□□ -0.2
SHMT2-218ENST00000555213 NEURL1BA8MQ27 555 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 ALDH1L1O75891 902 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 ZKSCAN2Q63HK3 967 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 NUTM1Q86Y26 1132 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-218ENST00000555213 ZBTB38Q8NAP3 1195 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-218ENST00000555213 PANK1Q8TE04 598 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 SYT17Q9BSW7 474 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 SRCIN1Q9C0H9 1055 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 ABCC12Q96J65 1359 aa13.78□□□□□ -0.2
SHMT2-218ENST00000555213 IGKV5-2P06315 115 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 CCT4P50991 539 aaKnown RBP13.77□□□□□ -0.21
SHMT2-218ENST00000555213 CWF19L2Q2TBE0 894 aaKnown RBP13.77□□□□□ -0.21
SHMT2-218ENST00000555213 ERFEQ4G0M1 354 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 BEND3Q5T5X7 828 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 ATF7IPQ6VMQ6 1270 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 KIF13BQ9NQT8 1826 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 PPP4R2Q9NY27 417 aa13.77□□□□□ -0.21
SHMT2-218ENST00000555213 H0YIN7 160 aa13.76□□□□□ -0.21
SHMT2-218ENST00000555213 PCCAP05165 728 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-218ENST00000555213 TRIM27P14373 513 aa13.76□□□□□ -0.21
SHMT2-218ENST00000555213 GCKRQ14397 625 aa13.76□□□□□ -0.21
SHMT2-218ENST00000555213 C2CD5Q86YS7 1000 aa13.76□□□□□ -0.21
SHMT2-218ENST00000555213 FTSJ3Q8IY81 847 aaKnown RBP13.76□□□□□ -0.21
SHMT2-218ENST00000555213 CCDC24Q8N4L8 307 aa13.76□□□□□ -0.21
SHMT2-218ENST00000555213 DCAF8L1A6NGE4 600 aa13.75□□□□□ -0.21
SHMT2-218ENST00000555213 MS4A1P11836 297 aa13.75□□□□□ -0.21
SHMT2-218ENST00000555213 NLGN2Q8NFZ4 835 aa13.75□□□□□ -0.21
SHMT2-218ENST00000555213 FAM89AQ96GI7 184 aa13.75□□□□□ -0.21
SHMT2-218ENST00000555213 NLRP3Q96P20 1036 aa13.75□□□□□ -0.21
SHMT2-218ENST00000555213 C9orf78Q9NZ63 289 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-218ENST00000555213 ABCC4O15439 1325 aa13.74□□□□□ -0.21
SHMT2-218ENST00000555213 CDHR2Q9BYE9 1310 aa13.74□□□□□ -0.21
SHMT2-218ENST00000555213 IRS4O14654 1257 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-218ENST00000555213 DPEP1P16444 411 aa13.74□□□□□ -0.21
SHMT2-218ENST00000555213 RTL5Q5HYW3 569 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-218ENST00000555213 SLC10A5Q5PT55 438 aa13.74□□□□□ -0.21
SHMT2-218ENST00000555213 UBE3BQ7Z3V4 1068 aa13.74□□□□□ -0.21
SHMT2-218ENST00000555213 RPGRQ92834 1020 aaKnown RBP13.74□□□□□ -0.21
SHMT2-218ENST00000555213 A0A0G2JLW4 131 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 GRM8O00222 908 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 HCLS1P14317 486 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-218ENST00000555213 NPR1P16066 1061 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 CHRNA5P30532 468 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 CLUAP1Q96AJ1 413 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 MASTLQ96GX5 879 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 COG6Q9Y2V7 657 aa13.73□□□□□ -0.21
SHMT2-218ENST00000555213 TNRC6CQ9HCJ0 1690 aaKnown RBP13.72□□□□□ -0.21
SHMT2-218ENST00000555213 ANKRD31Q8N7Z5 1873 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 KLRG2A4D1S0 409 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-218ENST00000555213 CRY2Q49AN0 593 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 STYK1Q6J9G0 422 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 DZIP1LQ8IYY4 767 aaKnown RBP13.72□□□□□ -0.21
SHMT2-218ENST00000555213 CNKSR1Q969H4 720 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 ZNF622Q969S3 477 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-218ENST00000555213 PIM2Q9P1W9 311 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 HDAC5Q9UQL6 1122 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 LAMB2P55268 1798 aa13.72□□□□□ -0.21
SHMT2-218ENST00000555213 N4BP2Q86UW6 1770 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-218ENST00000555213 H7C1W4 665 aa13.71□□□□□ -0.21
SHMT2-218ENST00000555213 PDE8AO60658 829 aa13.71□□□□□ -0.21
SHMT2-218ENST00000555213 SRGNP10124 158 aa13.71□□□□□ -0.21
SHMT2-218ENST00000555213 DALRD3Q5D0E6 543 aaKnown RBP13.71□□□□□ -0.21
SHMT2-218ENST00000555213 B4GALNT3Q6L9W6 998 aa13.71□□□□□ -0.21
SHMT2-218ENST00000555213 PELP1Q8IZL8 1130 aaKnown RBP13.71□□□□□ -0.21
SHMT2-218ENST00000555213 TMEM57Q8N5G2 664 aa13.71□□□□□ -0.21
SHMT2-218ENST00000555213 RBM17Q96I25 401 aaKnown RBP13.71□□□□□ -0.21
SHMT2-218ENST00000555213 DLEC1Q9Y238 1755 aa13.71□□□□□ -0.22
SHMT2-218ENST00000555213 COL11A2P13942 1736 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-218ENST00000555213 KIAA1551Q9HCM1 1747 aa13.7□□□□□ -0.22
SHMT2-218ENST00000555213 ALDH1B1P30837 517 aa13.7□□□□□ -0.22
SHMT2-218ENST00000555213 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms