RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TIAM2Q8IVF5 1701 aa20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 FAM177BA6PVY3 158 aa20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 KIF3CO14782 793 aa20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 NLRP10Q86W26 655 aa20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 UTP14AQ9BVJ6 771 aaKnown RBP20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 DICER1Q9UPY3 1922 aaKnown RBP20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 SNED1Q8TER0 1413 aa20.78■□□□□ 0.92
CCDC88C-209ENST00000554872 AIMP1Q12904 312 aaKnown RBP20.77■□□□□ 0.92
CCDC88C-209ENST00000554872 CCDC93Q567U6 631 aa20.77■□□□□ 0.92
CCDC88C-209ENST00000554872 ANKRD13DQ6ZTN6 518 aa20.77■□□□□ 0.92
CCDC88C-209ENST00000554872 ZNF526Q8TF50 670 aaPredicted RBP20.77■□□□□ 0.92
CCDC88C-209ENST00000554872 KDM2BQ8NHM5 1336 aa20.77■□□□□ 0.91
CCDC88C-209ENST00000554872 TRIM28Q13263 835 aaKnown RBP20.76■□□□□ 0.91
CCDC88C-209ENST00000554872 WDR63Q8IWG1 891 aa20.76■□□□□ 0.91
CCDC88C-209ENST00000554872 C8orf58Q8NAV2 365 aa20.76■□□□□ 0.91
CCDC88C-209ENST00000554872 TAOK3Q9H2K8 898 aa20.76■□□□□ 0.91
CCDC88C-209ENST00000554872 CRAMP1Q96RY5 1269 aa20.75■□□□□ 0.91
CCDC88C-209ENST00000554872 ISCA1Q9BUE6 129 aa20.75■□□□□ 0.91
CCDC88C-209ENST00000554872 CCDC30Q5VVM6 783 aa20.74■□□□□ 0.91
CCDC88C-209ENST00000554872 CC2D2BQ6DHV5 1058 aa20.74■□□□□ 0.91
CCDC88C-209ENST00000554872 CCDC88AQ3V6T2 1871 aa20.73■□□□□ 0.91
CCDC88C-209ENST00000554872 GRIPAP1Q4V328 841 aa20.73■□□□□ 0.91
CCDC88C-209ENST00000554872 RTKN2Q8IZC4 609 aa20.73■□□□□ 0.91
CCDC88C-209ENST00000554872 RPGRQ92834 1020 aaKnown RBP20.73■□□□□ 0.91
CCDC88C-209ENST00000554872 SH3TC1Q8TE82 1336 aa20.73■□□□□ 0.91
CCDC88C-209ENST00000554872 NLRP3Q96P20 1036 aa20.72■□□□□ 0.91
CCDC88C-209ENST00000554872 GLTPD2A6NH11 291 aa20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 FKBP4Q02790 459 aaKnown RBP eCLIP20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 GOLGA2Q08379 1002 aa20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 TSPYL6Q8N831 410 aa20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 TSR2Q969E8 191 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 RBM17Q96I25 401 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 NMRK2Q9NPI5 230 aa20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 LAMB2P55268 1798 aa20.71■□□□□ 0.91
CCDC88C-209ENST00000554872 ELL2O00472 640 aaPredicted RBP20.7■□□□□ 0.9
CCDC88C-209ENST00000554872 TOMM70O94826 608 aa20.7■□□□□ 0.9
CCDC88C-209ENST00000554872 C3orf67Q6ZVT6 689 aa20.7■□□□□ 0.9
CCDC88C-209ENST00000554872 PSMD1Q99460 953 aa20.7■□□□□ 0.9
CCDC88C-209ENST00000554872 ZNF219Q9P2Y4 722 aaPredicted RBP20.7■□□□□ 0.9
CCDC88C-209ENST00000554872 TRMT112Q9UI30 125 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-209ENST00000554872 FANCIQ9NVI1 1328 aa20.69■□□□□ 0.9
CCDC88C-209ENST00000554872 DDX60Q8IY21 1712 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-209ENST00000554872 WDR90Q96KV7 1748 aa20.69■□□□□ 0.9
CCDC88C-209ENST00000554872 TWISTNBQ3B726 338 aaPredicted RBP20.68■□□□□ 0.9
CCDC88C-209ENST00000554872 PHAXQ9H814 394 aaKnown RBP20.68■□□□□ 0.9
CCDC88C-209ENST00000554872 DDX58O95786 925 aaKnown RBP20.67■□□□□ 0.9
CCDC88C-209ENST00000554872 PPEF1O14829 653 aaPredicted RBP20.66■□□□□ 0.9
CCDC88C-209ENST00000554872 RIC3Q7Z5B4 369 aa20.66■□□□□ 0.9
CCDC88C-209ENST00000554872 RBM46Q8TBY0 533 aaKnown RBP20.66■□□□□ 0.9
CCDC88C-209ENST00000554872 STK31Q9BXU1 1019 aa20.66■□□□□ 0.9
CCDC88C-209ENST00000554872 ZNF521Q96K83 1311 aa20.66■□□□□ 0.9
CCDC88C-209ENST00000554872 CACNA1FO60840 1977 aa20.65■□□□□ 0.9
CCDC88C-209ENST00000554872 ABCC4O15439 1325 aa20.65■□□□□ 0.9
CCDC88C-209ENST00000554872 DPY19L2Q6NUT2 758 aa20.65■□□□□ 0.9
CCDC88C-209ENST00000554872 FAM9BQ8IZU0 186 aa20.65■□□□□ 0.9
CCDC88C-209ENST00000554872 CCDC191Q8NCU4 936 aa20.65■□□□□ 0.9
CCDC88C-209ENST00000554872 ATP5J2-PTCD1G3V325 749 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 BBOX1O75936 387 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 HCLS1P14317 486 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 HSP90B1P14625 803 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 SF3B3Q15393 1217 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 OLFM4Q6UX06 510 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 TMC4Q7Z404 712 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 SYNE4Q8N205 404 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 METTL22Q9BUU2 404 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 ATP6V0A2Q9Y487 856 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 CEP350Q5VT06 3117 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 LRRC37AA6NMS7 1700 aa20.64■□□□□ 0.89
CCDC88C-209ENST00000554872 VEGFAP15692 232 aaPredicted RBP20.63■□□□□ 0.89
CCDC88C-209ENST00000554872 ZBTB38Q8NAP3 1195 aaPredicted RBP20.63■□□□□ 0.89
CCDC88C-209ENST00000554872 VPS33BQ9H267 617 aa20.63■□□□□ 0.89
CCDC88C-209ENST00000554872 SENP3-EIF4A1A0A087X0R7 540 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 HSPA6P17066 643 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 IARSP41252 1262 aaKnown RBP20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 FSTL1Q12841 308 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 KSR2Q6VAB6 950 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 MYH16Q9H6N6 1097 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 RRAGCQ9HB90 399 aa20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 ZNF277Q9NRM2 450 aaPredicted RBP20.62■□□□□ 0.89
CCDC88C-209ENST00000554872 PCCAP05165 728 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 GRAPQ13588 217 aa20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 DDX46Q7L014 1031 aaKnown RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 C16orf71Q8IYS4 520 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 GRAPLQ8TC17 118 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 FAM89AQ96GI7 184 aa20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 L3MBTL3Q96JM7 780 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 RTFDC1Q9BY42 306 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-209ENST00000554872 CCER2I3L3R5 266 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 FZD9O00144 591 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 VAMP4O75379 141 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 SP8Q8IXZ3 490 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 MYD88Q99836 296 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 CWC25Q9NXE8 425 aaPredicted RBP20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 MAP3K2Q9Y2U5 619 aa20.6■□□□□ 0.89
CCDC88C-209ENST00000554872 PI4KAP2A4QPH2 592 aa20.59■□□□□ 0.89
CCDC88C-209ENST00000554872 POTECB2RU33 542 aa20.59■□□□□ 0.89
CCDC88C-209ENST00000554872 IRS4O14654 1257 aaPredicted RBP20.59■□□□□ 0.89
CCDC88C-209ENST00000554872 PI4KAP1Q8N8J0 262 aa20.59■□□□□ 0.89
CCDC88C-209ENST00000554872 TMX4Q9H1E5 349 aaPredicted RBP20.59■□□□□ 0.89
CCDC88C-209ENST00000554872 SPINK5Q9NQ38 1064 aaPredicted RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms