RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 CCDC30Q5VVM6 783 aa13.75□□□□□ -0.21
SHMT2-213ENST00000554600 PRPF40BQ6NWY9 871 aaKnown RBP13.75□□□□□ -0.21
SHMT2-213ENST00000554600 ANKRD13DQ6ZTN6 518 aa13.75□□□□□ -0.21
SHMT2-213ENST00000554600 TSPYL6Q8N831 410 aa13.75□□□□□ -0.21
SHMT2-213ENST00000554600 PLBD2Q8NHP8 589 aa13.75□□□□□ -0.21
SHMT2-213ENST00000554600 ZNF428Q96B54 188 aa13.75□□□□□ -0.21
SHMT2-213ENST00000554600 UTP14AQ9BVJ6 771 aaKnown RBP13.75□□□□□ -0.21
SHMT2-213ENST00000554600 TCERG1O14776 1098 aaKnown RBP13.74□□□□□ -0.21
SHMT2-213ENST00000554600 NTSR2O95665 410 aa13.74□□□□□ -0.21
SHMT2-213ENST00000554600 TCIRG1Q13488 830 aa13.74□□□□□ -0.21
SHMT2-213ENST00000554600 TWISTNBQ3B726 338 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-213ENST00000554600 NCBP3Q53F19 620 aaKnown RBP13.74□□□□□ -0.21
SHMT2-213ENST00000554600 RIC3Q7Z5B4 369 aa13.74□□□□□ -0.21
SHMT2-213ENST00000554600 RPGRQ92834 1020 aaKnown RBP13.74□□□□□ -0.21
SHMT2-213ENST00000554600 STK31Q9BXU1 1019 aa13.74□□□□□ -0.21
SHMT2-213ENST00000554600 PHAXQ9H814 394 aaKnown RBP13.74□□□□□ -0.21
SHMT2-213ENST00000554600 DDX60Q8IY21 1712 aaKnown RBP13.73□□□□□ -0.21
SHMT2-213ENST00000554600 FANCIQ9NVI1 1328 aa13.73□□□□□ -0.21
SHMT2-213ENST00000554600 ALDH1B1P30837 517 aa13.73□□□□□ -0.21
SHMT2-213ENST00000554600 NLRP10Q86W26 655 aa13.73□□□□□ -0.21
SHMT2-213ENST00000554600 WDR63Q8IWG1 891 aa13.73□□□□□ -0.21
SHMT2-213ENST00000554600 TRMT112Q9UI30 125 aaKnown RBP13.73□□□□□ -0.21
SHMT2-213ENST00000554600 MYH3P11055 1940 aa13.72□□□□□ -0.21
SHMT2-213ENST00000554600 ATP5J2-PTCD1G3V325 749 aa13.72□□□□□ -0.21
SHMT2-213ENST00000554600 LMNB1P20700 586 aa13.72□□□□□ -0.21
SHMT2-213ENST00000554600 SOGA3Q5TF21 947 aa13.72□□□□□ -0.21
SHMT2-213ENST00000554600 KLRG2A4D1S0 409 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-213ENST00000554600 DDX58O95786 925 aaKnown RBP13.71□□□□□ -0.21
SHMT2-213ENST00000554600 NLRP3Q96P20 1036 aa13.71□□□□□ -0.21
SHMT2-213ENST00000554600 RIC1Q4ADV7 1423 aa13.71□□□□□ -0.22
SHMT2-213ENST00000554600 RNF123Q5XPI4 1314 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 NFKBIEO00221 500 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 HCLS1P14317 486 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-213ENST00000554600 EXOSC9Q06265 439 aaKnown RBP13.7□□□□□ -0.22
SHMT2-213ENST00000554600 CCDC93Q567U6 631 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 RTL5Q5HYW3 569 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-213ENST00000554600 SYNE4Q8N205 404 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 RBM17Q96I25 401 aaKnown RBP13.7□□□□□ -0.22
SHMT2-213ENST00000554600 TAOK3Q9H2K8 898 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 MYH16Q9H6N6 1097 aa13.7□□□□□ -0.22
SHMT2-213ENST00000554600 SH3TC1Q8TE82 1336 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 CRY2Q49AN0 593 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 OLFM4Q6UX06 510 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 C3orf67Q6ZVT6 689 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 MYD88Q99836 296 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 ISCA1Q9BUE6 129 aa13.69□□□□□ -0.22
SHMT2-213ENST00000554600 CCER2I3L3R5 266 aa13.68□□□□□ -0.22
SHMT2-213ENST00000554600 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
SHMT2-213ENST00000554600 HSPA6P17066 643 aa13.68□□□□□ -0.22
SHMT2-213ENST00000554600 PRELPP51888 382 aa13.68□□□□□ -0.22
SHMT2-213ENST00000554600 FAM89AQ96GI7 184 aa13.68□□□□□ -0.22
SHMT2-213ENST00000554600 KDM2BQ8NHM5 1336 aa13.67□□□□□ -0.22
SHMT2-213ENST00000554600 SPEF2Q9C093 1822 aa13.67□□□□□ -0.22
SHMT2-213ENST00000554600 HOXA10P31260 410 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-213ENST00000554600 SLC10A5Q5PT55 438 aa13.67□□□□□ -0.22
SHMT2-213ENST00000554600 DIEXFQ68CQ4 756 aaKnown RBP13.67□□□□□ -0.22
SHMT2-213ENST00000554600 CRAMP1Q96RY5 1269 aa13.67□□□□□ -0.22
SHMT2-213ENST00000554600 TMX4Q9H1E5 349 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-213ENST00000554600 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-213ENST00000554600 MAP3K2Q9Y2U5 619 aa13.67□□□□□ -0.22
SHMT2-213ENST00000554600 PPEF1O14829 653 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-213ENST00000554600 NEXNQ0ZGT2 675 aa13.66□□□□□ -0.22
SHMT2-213ENST00000554600 DDX46Q7L014 1031 aaKnown RBP13.66□□□□□ -0.22
SHMT2-213ENST00000554600 G2E3Q7L622 706 aa13.66□□□□□ -0.22
SHMT2-213ENST00000554600 RTKN2Q8IZC4 609 aa13.66□□□□□ -0.22
SHMT2-213ENST00000554600 C7orf43Q8WVR3 580 aa13.66□□□□□ -0.22
SHMT2-213ENST00000554600 METTL22Q9BUU2 404 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-213ENST00000554600 NMRK2Q9NPI5 230 aa13.66□□□□□ -0.22
SHMT2-213ENST00000554600 LTBP3Q9NS15 1303 aa13.65□□□□□ -0.22
SHMT2-213ENST00000554600 PI4KAP2A4QPH2 592 aa13.65□□□□□ -0.22
SHMT2-213ENST00000554600 VAMP4O75379 141 aa13.65□□□□□ -0.22
SHMT2-213ENST00000554600 FKBP4Q02790 459 aaKnown RBP eCLIP13.65□□□□□ -0.22
SHMT2-213ENST00000554600 KSR2Q6VAB6 950 aa13.65□□□□□ -0.22
SHMT2-213ENST00000554600 PI4KAP1Q8N8J0 262 aa13.65□□□□□ -0.22
SHMT2-213ENST00000554600 ZNF277Q9NRM2 450 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-213ENST00000554600 CWC25Q9NXE8 425 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-213ENST00000554600 ABCC4O15439 1325 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 ZC3H4Q9UPT8 1303 aaKnown RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 IRS4O14654 1257 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 FLIIQ13045 1269 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 TRIM28Q13263 835 aaKnown RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 FKBP5Q13451 457 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 CC2D2BQ6DHV5 1058 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 DPY19L2Q6NUT2 758 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 C16orf71Q8IYS4 520 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 CCDC191Q8NCU4 936 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 JARID2Q92833 1246 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-213ENST00000554600 RRAGCQ9HB90 399 aa13.64□□□□□ -0.23
SHMT2-213ENST00000554600 ZNF521Q96K83 1311 aa13.63□□□□□ -0.23
SHMT2-213ENST00000554600 GLTPD2A6NH11 291 aa13.62□□□□□ -0.23
SHMT2-213ENST00000554600 KIF3CO14782 793 aa13.62□□□□□ -0.23
SHMT2-213ENST00000554600 HSP90B1P14625 803 aaKnown RBP13.62□□□□□ -0.23
SHMT2-213ENST00000554600 ZBTB38Q8NAP3 1195 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-213ENST00000554600 E9PSI1 815 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 BBOX1O75936 387 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 PCCAP05165 728 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-213ENST00000554600 IARSP41252 1262 aaKnown RBP13.61□□□□□ -0.23
SHMT2-213ENST00000554600 GRAPQ13588 217 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 CWF19L2Q2TBE0 894 aaKnown RBP13.61□□□□□ -0.23
SHMT2-213ENST00000554600 SLC51AQ86UW1 340 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms