RNA–Protein interactions for RNA: ENST00000554508.5

ACTN1-213, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-213ENST00000554508 UTP14AQ9BVJ6 771 aaKnown RBP11.31□□□□□ -0.6
ACTN1-213ENST00000554508 TIAM2Q8IVF5 1701 aa11.31□□□□□ -0.6
ACTN1-213ENST00000554508 RNF123Q5XPI4 1314 aa11.31□□□□□ -0.6
ACTN1-213ENST00000554508 TNRC6CQ9HCJ0 1690 aaKnown RBP11.3□□□□□ -0.6
ACTN1-213ENST00000554508 SENP3-EIF4A1A0A087X0R7 540 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 TOMM70O94826 608 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 HOXA10P31260 410 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-213ENST00000554508 PRELPP51888 382 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 CCDC93Q567U6 631 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 ANKRD13DQ6ZTN6 518 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 RPGRQ92834 1020 aaKnown RBP11.3□□□□□ -0.6
ACTN1-213ENST00000554508 TAOK3Q9H2K8 898 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 CACNA1FO60840 1977 aa11.3□□□□□ -0.6
ACTN1-213ENST00000554508 ABCC12Q96J65 1359 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 GLTPD2A6NH11 291 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 CC2D2BQ6DHV5 1058 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 DPY19L2Q6NUT2 758 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 NLRP10Q86W26 655 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 WWC1Q8IX03 1113 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 C16orf71Q8IYS4 520 aaPredicted RBP11.29□□□□□ -0.6
ACTN1-213ENST00000554508 RTKN2Q8IZC4 609 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 PLBD2Q8NHP8 589 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 RBM17Q96I25 401 aaKnown RBP11.29□□□□□ -0.6
ACTN1-213ENST00000554508 NLRP3Q96P20 1036 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 NMRK2Q9NPI5 230 aa11.29□□□□□ -0.6
ACTN1-213ENST00000554508 GRIPAP1Q4V328 841 aa11.28□□□□□ -0.6
ACTN1-213ENST00000554508 CRAMP1Q96RY5 1269 aa11.28□□□□□ -0.6
ACTN1-213ENST00000554508 RRAGCQ9HB90 399 aa11.28□□□□□ -0.6
ACTN1-213ENST00000554508 IL16Q14005 1332 aa11.28□□□□□ -0.6
ACTN1-213ENST00000554508 LAMB2P55268 1798 aa11.28□□□□□ -0.6
ACTN1-213ENST00000554508 ELL2O00472 640 aaPredicted RBP11.27□□□□□ -0.61
ACTN1-213ENST00000554508 HSPA6P17066 643 aa11.27□□□□□ -0.61
ACTN1-213ENST00000554508 FKBP4Q02790 459 aaKnown RBP eCLIP11.27□□□□□ -0.61
ACTN1-213ENST00000554508 CCDC30Q5VVM6 783 aa11.27□□□□□ -0.61
ACTN1-213ENST00000554508 C8orf58Q8NAV2 365 aa11.27□□□□□ -0.61
ACTN1-213ENST00000554508 RBM46Q8TBY0 533 aaKnown RBP11.27□□□□□ -0.61
ACTN1-213ENST00000554508 TRMT112Q9UI30 125 aaKnown RBP11.27□□□□□ -0.61
ACTN1-213ENST00000554508 VEGFAP15692 232 aaPredicted RBP11.26□□□□□ -0.61
ACTN1-213ENST00000554508 TRIM28Q13263 835 aaKnown RBP11.26□□□□□ -0.61
ACTN1-213ENST00000554508 WDR63Q8IWG1 891 aa11.26□□□□□ -0.61
ACTN1-213ENST00000554508 ISCA1Q9BUE6 129 aa11.26□□□□□ -0.61
ACTN1-213ENST00000554508 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
ACTN1-213ENST00000554508 WDR90Q96KV7 1748 aa11.26□□□□□ -0.61
ACTN1-213ENST00000554508 GOLGA2Q08379 1002 aa11.25□□□□□ -0.61
ACTN1-213ENST00000554508 FSTL1Q12841 308 aa11.25□□□□□ -0.61
ACTN1-213ENST00000554508 DIEXFQ68CQ4 756 aaKnown RBP11.25□□□□□ -0.61
ACTN1-213ENST00000554508 RIC3Q7Z5B4 369 aa11.25□□□□□ -0.61
ACTN1-213ENST00000554508 SYNE4Q8N205 404 aa11.25□□□□□ -0.61
ACTN1-213ENST00000554508 PSMD1Q99460 953 aa11.25□□□□□ -0.61
ACTN1-213ENST00000554508 TMX4Q9H1E5 349 aaPredicted RBP11.25□□□□□ -0.61
ACTN1-213ENST00000554508 BBOX1O75936 387 aa11.24□□□□□ -0.61
ACTN1-213ENST00000554508 DDX58O95786 925 aaKnown RBP11.24□□□□□ -0.61
ACTN1-213ENST00000554508 HCLS1P14317 486 aaPredicted RBP11.24□□□□□ -0.61
ACTN1-213ENST00000554508 IARSP41252 1262 aaKnown RBP11.24□□□□□ -0.61
ACTN1-213ENST00000554508 OLFM4Q6UX06 510 aa11.24□□□□□ -0.61
ACTN1-213ENST00000554508 C3orf67Q6ZVT6 689 aa11.24□□□□□ -0.61
ACTN1-213ENST00000554508 PHAXQ9H814 394 aaKnown RBP11.24□□□□□ -0.61
ACTN1-213ENST00000554508 DDX60Q8IY21 1712 aaKnown RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 SCN4AP35499 1836 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 TAF1P21675 1872 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 ATP5J2-PTCD1G3V325 749 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 PPEF1O14829 653 aaPredicted RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 HSP90B1P14625 803 aaKnown RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 TWISTNBQ3B726 338 aaPredicted RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 DDX46Q7L014 1031 aaKnown RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 FAM9BQ8IZU0 186 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 TSPYL6Q8N831 410 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 TSR2Q969E8 191 aaKnown RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 STK31Q9BXU1 1019 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 ZNF277Q9NRM2 450 aaPredicted RBP11.23□□□□□ -0.61
ACTN1-213ENST00000554508 SNED1Q8TER0 1413 aa11.23□□□□□ -0.61
ACTN1-213ENST00000554508 ABCC4O15439 1325 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 APLP1P51693 650 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 TMC4Q7Z404 712 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 SP8Q8IXZ3 490 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 CCDC191Q8NCU4 936 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 SMC1BQ8NDV3 1235 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 JDP2Q8WYK2 163 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 FAM89AQ96GI7 184 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 METTL22Q9BUU2 404 aaPredicted RBP11.22□□□□□ -0.61
ACTN1-213ENST00000554508 VPS33BQ9H267 617 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 ATP6V0A2Q9Y487 856 aa11.22□□□□□ -0.61
ACTN1-213ENST00000554508 POTECB2RU33 542 aa11.21□□□□□ -0.61
ACTN1-213ENST00000554508 TCERG1O14776 1098 aaKnown RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 DDNO94850 711 aaPredicted RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 GRAPQ13588 217 aa11.21□□□□□ -0.61
ACTN1-213ENST00000554508 SF3B3Q15393 1217 aaKnown RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 KSR2Q6VAB6 950 aa11.21□□□□□ -0.61
ACTN1-213ENST00000554508 ZBTB38Q8NAP3 1195 aaPredicted RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 SUPT20HQ8NEM7 779 aa11.21□□□□□ -0.61
ACTN1-213ENST00000554508 GRAPLQ8TC17 118 aaPredicted RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 MYD88Q99836 296 aa11.21□□□□□ -0.61
ACTN1-213ENST00000554508 SALL2Q9Y467 1007 aaPredicted RBP11.21□□□□□ -0.61
ACTN1-213ENST00000554508 FZD9O00144 591 aa11.2□□□□□ -0.62
ACTN1-213ENST00000554508 IRS4O14654 1257 aaPredicted RBP11.2□□□□□ -0.62
ACTN1-213ENST00000554508 L3MBTL3Q96JM7 780 aaPredicted RBP11.2□□□□□ -0.62
ACTN1-213ENST00000554508 CWC25Q9NXE8 425 aaPredicted RBP11.2□□□□□ -0.62
ACTN1-213ENST00000554508 MAP3K2Q9Y2U5 619 aa11.2□□□□□ -0.62
ACTN1-213ENST00000554508 MYH3P11055 1940 aa11.19□□□□□ -0.62
ACTN1-213ENST00000554508 FANCIQ9NVI1 1328 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms