RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 STYK1Q6J9G0 422 aa14.95□□□□□ -0.02
CCDC88C-208ENST00000554165 PRPF40BQ6NWY9 871 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-208ENST00000554165 ZNF526Q8TF50 670 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-208ENST00000554165 MASTLQ96GX5 879 aa14.95□□□□□ -0.02
CCDC88C-208ENST00000554165 UTP14AQ9BVJ6 771 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-208ENST00000554165 VAMP4O75379 141 aa14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 HCLS1P14317 486 aaPredicted RBP14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 PARP10Q53GL7 1025 aa14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 C9orf131Q5VYM1 1079 aa14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 PPP1R42Q7Z4L9 355 aa14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 ADCY9O60503 1353 aa14.94□□□□□ -0.02
CCDC88C-208ENST00000554165 NFKBIEO00221 500 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 NPR1P16066 1061 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 GOLGA2Q08379 1002 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 RTL5Q5HYW3 569 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 C7orf43Q8WVR3 580 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 CNKSR1Q969H4 720 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 ISCA1Q9BUE6 129 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 TRMT112Q9UI30 125 aaKnown RBP14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 PDZRN3Q9UPQ7 1066 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 IBTKQ9P2D0 1353 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 CACNA1SQ13698 1873 aa14.93□□□□□ -0.02
CCDC88C-208ENST00000554165 SLC4A2P04920 1241 aa14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 CRY2Q49AN0 593 aa14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 HSP90AB3PQ58FF7 597 aa14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 RIC3Q7Z5B4 369 aa14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 JARID2Q92833 1246 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 ANKRD36CQ5JPF3 1778 aa14.92□□□□□ -0.02
CCDC88C-208ENST00000554165 FAM89AQ96GI7 184 aa14.91□□□□□ -0.02
CCDC88C-208ENST00000554165 CDCA7LQ96GN5 454 aa14.91□□□□□ -0.02
CCDC88C-208ENST00000554165 MYD88Q99836 296 aa14.91□□□□□ -0.02
CCDC88C-208ENST00000554165 RNF181Q9P0P0 153 aa14.91□□□□□ -0.02
CCDC88C-208ENST00000554165 ARFGEF2Q9Y6D5 1785 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 PI4KAP2A4QPH2 592 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 SLC10A5Q5PT55 438 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 PI4KAP1Q8N8J0 262 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 STK31Q9BXU1 1019 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 MYH16Q9H6N6 1097 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 MAP3K2Q9Y2U5 619 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 SBF1O95248 1867 aa14.9□□□□□ -0.02
CCDC88C-208ENST00000554165 HOXA10P31260 410 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-208ENST00000554165 RPGRQ92834 1020 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-208ENST00000554165 RIC1Q4ADV7 1423 aa14.89□□□□□ -0.03
CCDC88C-208ENST00000554165 SH3TC1Q8TE82 1336 aa14.89□□□□□ -0.03
CCDC88C-208ENST00000554165 TRIM28Q13263 835 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-208ENST00000554165 KSR2Q6VAB6 950 aa14.88□□□□□ -0.03
CCDC88C-208ENST00000554165 NLRP3Q96P20 1036 aa14.88□□□□□ -0.03
CCDC88C-208ENST00000554165 METTL22Q9BUU2 404 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-208ENST00000554165 IGKV5-2P06315 115 aa14.87□□□□□ -0.03
CCDC88C-208ENST00000554165 LMNB1P20700 586 aa14.87□□□□□ -0.03
CCDC88C-208ENST00000554165 SLFN5Q08AF3 891 aa14.87□□□□□ -0.03
CCDC88C-208ENST00000554165 FLIIQ13045 1269 aa14.87□□□□□ -0.03
CCDC88C-208ENST00000554165 DDX58O95786 925 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 ALDH1B1P30837 517 aa14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 CWF19L2Q2TBE0 894 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 RBM17Q96I25 401 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 CHMP4AQ9BY43 222 aa14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 GPBP1L1Q9HC44 474 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 FER1L6Q2WGJ9 1857 aa14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 CCDC88AQ3V6T2 1871 aa14.86□□□□□ -0.03
CCDC88C-208ENST00000554165 LAMB2P55268 1798 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 TAF1P21675 1872 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 CCDC93Q567U6 631 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 CRAMP1Q96RY5 1269 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 TAOK3Q9H2K8 898 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 ZNF277Q9NRM2 450 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 ABCC4O15439 1325 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 RNF123Q5XPI4 1314 aa14.85□□□□□ -0.03
CCDC88C-208ENST00000554165 E9PSI1 815 aa14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 F6X3S4 739 aa14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 IRS4O14654 1257 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 FKBP5Q13451 457 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 CCDC191Q8NCU4 936 aa14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 NMRK2Q9NPI5 230 aa14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 CWC25Q9NXE8 425 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 COL4A1P02462 1669 aa14.84□□□□□ -0.03
CCDC88C-208ENST00000554165 DDX60Q8IY21 1712 aaKnown RBP14.83□□□□□ -0.03
CCDC88C-208ENST00000554165 PPEF1O14829 653 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-208ENST00000554165 ZBTB38Q8NAP3 1195 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-208ENST00000554165 LTBP3Q9NS15 1303 aa14.83□□□□□ -0.04
CCDC88C-208ENST00000554165 SNED1Q8TER0 1413 aa14.83□□□□□ -0.04
CCDC88C-208ENST00000554165 NEURL1BA8MQ27 555 aa14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 PCCAP05165 728 aaPredicted RBP14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 FKBP4Q02790 459 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 SOGA3Q5TF21 947 aa14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 TRMT2AQ8IZ69 625 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 DNAAF4Q8WXU2 420 aa14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 CCDC85AQ96PX6 553 aaPredicted RBP14.82□□□□□ -0.04
CCDC88C-208ENST00000554165 KIF3CO14782 793 aa14.81□□□□□ -0.04
CCDC88C-208ENST00000554165 DDX46Q7L014 1031 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-208ENST00000554165 CELF1Q92879 486 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-208ENST00000554165 BCL2L13Q9BXK5 485 aa14.81□□□□□ -0.04
CCDC88C-208ENST00000554165 GRAPQ13588 217 aa14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 SF3B3Q15393 1217 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 RTKN2Q8IZC4 609 aa14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 MRPL50Q8N5N7 158 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 GRAPLQ8TC17 118 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 SSH1Q8WYL5 1049 aa14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 SEC31BQ9NQW1 1179 aa14.8□□□□□ -0.04
CCDC88C-208ENST00000554165 ATP6V0A2Q9Y487 856 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms