RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 EIF5P55010 431 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 CCDC30Q5VVM6 783 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 NBPF6Q5VWK0 638 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 TTLL5Q6EMB2 1281 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 ITFG2Q969R8 447 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 NBPF4Q96M43 638 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 PRAM1Q96QH2 718 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 ARFGAP3Q9NP61 516 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 GNL3LQ9NVN8 582 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 CCDC9Q9Y3X0 531 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 ABCA8O94911 1581 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 TTC41PQ6P2S7 1318 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 FAM135BQ49AJ0 1406 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 SYT1P21579 422 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 SSR1P43307 286 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 EVCP57679 992 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 DNM1Q05193 864 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 CPLX2Q6PUV4 134 aaKnown RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 NBPF5PQ86XG9 351 aaPredicted RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 ERC1Q8IUD2 1116 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 VPS18Q9P253 973 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 TRIM35Q9UPQ4 493 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 AKAP2Q9Y2D5 859 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 ATP6V1DQ9Y5K8 247 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 ABCC4O15439 1325 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 HECW2Q9P2P5 1572 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 MYH15Q9Y2K3 1946 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 PPFIA4O75335 1185 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 GNAI3P08754 354 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 KCNJ6P48051 423 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 IQCB1Q15051 598 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 GORABQ5T7V8 394 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 GPR161Q8N6U8 529 aaKnown RBP11.15□□□□□ -0.62
SIX4-202ENST00000554079 EPC1Q9H2F5 836 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 ASXL2Q76L83 1435 aa11.15□□□□□ -0.62
SIX4-202ENST00000554079 CDC42BPBQ9Y5S2 1711 aa11.15□□□□□ -0.63
SIX4-202ENST00000554079 H0YHG0 523 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 USP8P40818 1118 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 ZNF165P49910 485 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 IRX1P78414 480 aaPredicted RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 SARNPP82979 210 aaKnown RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 APOBRQ0VD83 1088 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 CAMK4Q16566 473 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 NAIF1Q69YI7 327 aaPredicted RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 CKAP2LQ8IYA6 745 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 MSL3Q8N5Y2 521 aaKnown RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 SYTL4Q96C24 671 aaPredicted RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 CARD6Q9BX69 1037 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 DNAJC25Q9H1X3 360 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 DNAI1Q9UI46 699 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 MCM8Q9UJA3 840 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 SSH2Q76I76 1423 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 ATP10DQ9P241 1426 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 CHD2O14647 1828 aaKnown RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 ZCCHC11Q5TAX3 1644 aaKnown RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 FANCGO15287 622 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 ERLIN2O94905 339 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 ELF1P32519 619 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 GNAI1P63096 354 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 LONRF2Q1L5Z9 754 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 LRRFIP1Q32MZ4 808 aaKnown RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 TTC19Q6DKK2 380 aaPredicted RBP11.14□□□□□ -0.63
SIX4-202ENST00000554079 USP16Q9Y5T5 823 aa11.14□□□□□ -0.63
SIX4-202ENST00000554079 SRGAP3O43295 1099 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 CLSTN1O94985 981 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 ETF1P62495 437 aaKnown RBP11.13□□□□□ -0.63
SIX4-202ENST00000554079 RSRC2Q7L4I2 434 aaKnown RBP11.13□□□□□ -0.63
SIX4-202ENST00000554079 TTC6Q86TZ1 520 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 OSBPL5Q9H0X9 879 aaPredicted RBP11.13□□□□□ -0.63
SIX4-202ENST00000554079 TNMDQ9H2S6 317 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 CLSTN2Q9H4D0 955 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 NSD3Q9BZ95 1437 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 GPTP24298 496 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 ZC3H12AQ5D1E8 599 aaKnown RBP11.13□□□□□ -0.63
SIX4-202ENST00000554079 GBP6Q6ZN66 633 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 ARHGAP45Q92619 1136 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 ESYT1Q9BSJ8 1104 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 FAM107BQ9H098 131 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 TERF2IPQ9NYB0 399 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 FBXO3Q9UK99 471 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 TRAK1Q9UPV9 953 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 MTMR6Q9Y217 621 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 PARP3Q9Y6F1 533 aa11.13□□□□□ -0.63
SIX4-202ENST00000554079 KIF13AQ9H1H9 1805 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 ERCC3P19447 782 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 GSDMDP57764 484 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 FBXW10Q5XX13 1052 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 TRIM65Q6PJ69 517 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 GIMAP7Q8NHV1 300 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 TATDN2Q93075 761 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 PARD6BQ9BYG5 372 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 UPF3BQ9BZI7 483 aaKnown RBP11.12□□□□□ -0.63
SIX4-202ENST00000554079 PDE11AQ9HCR9 933 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 FAN1Q9Y2M0 1017 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 PREX1Q8TCU6 1659 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 TTC21AQ8NDW8 1320 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 GLI2P10070 1586 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 DIP2BQ9P265 1576 aa11.12□□□□□ -0.63
SIX4-202ENST00000554079 CAVIN2O95810 425 aa11.11□□□□□ -0.63
SIX4-202ENST00000554079 PAX7P23759 505 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms