RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 SH3TC1Q8TE82 1336 aa18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 FAM177BA6PVY3 158 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 SLC4A2P04920 1241 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 CT47B1P0C2W7 299 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 YY1P25490 414 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 SLFN5Q08AF3 891 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 NEXNQ0ZGT2 675 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 CRY2Q49AN0 593 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 ISCA1Q9BUE6 129 aa18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 PHAXQ9H814 394 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-207ENST00000554051 KSR2Q6VAB6 950 aa18.39■□□□□ 0.53
CCDC88C-207ENST00000554051 ZNF622Q969S3 477 aaKnown RBP eCLIP18.39■□□□□ 0.53
CCDC88C-207ENST00000554051 FLIIQ13045 1269 aa18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 ERFEQ4G0M1 354 aa18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 NUTM1Q86Y26 1132 aa18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 CCDC191Q8NCU4 936 aa18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 METTL22Q9BUU2 404 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 TRMT112Q9UI30 125 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-207ENST00000554051 ALDH1B1P30837 517 aa18.37■□□□□ 0.53
CCDC88C-207ENST00000554051 SLC10A5Q5PT55 438 aa18.37■□□□□ 0.53
CCDC88C-207ENST00000554051 RPGRQ92834 1020 aaKnown RBP18.37■□□□□ 0.53
CCDC88C-207ENST00000554051 NLRP3Q96P20 1036 aa18.37■□□□□ 0.53
CCDC88C-207ENST00000554051 WWC3Q9ULE0 1092 aa18.37■□□□□ 0.53
CCDC88C-207ENST00000554051 ADCY9O60503 1353 aa18.36■□□□□ 0.53
CCDC88C-207ENST00000554051 FKBP5Q13451 457 aaPredicted RBP18.36■□□□□ 0.53
CCDC88C-207ENST00000554051 CCDC24Q8N4L8 307 aa18.36■□□□□ 0.53
CCDC88C-207ENST00000554051 MAP3K2Q9Y2U5 619 aa18.36■□□□□ 0.53
CCDC88C-207ENST00000554051 CACNA1SQ13698 1873 aa18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 HOXA10P31260 410 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 GRIPAP1Q4V328 841 aa18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 PRPF40BQ6NWY9 871 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 CWC25Q9NXE8 425 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 DDX60Q8IY21 1712 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-207ENST00000554051 ZC3H4Q9UPT8 1303 aaKnown RBP18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 PI4KAP2A4QPH2 592 aa18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 HNRNPUQ00839 825 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 ARHGAP27Q6ZUM4 889 aa18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 TRMT2AQ8IZ69 625 aaKnown RBP18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 PI4KAP1Q8N8J0 262 aa18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 ZBTB38Q8NAP3 1195 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 RBM17Q96I25 401 aaKnown RBP18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 MYD88Q99836 296 aa18.34■□□□□ 0.53
CCDC88C-207ENST00000554051 LTBP3Q9NS15 1303 aa18.33■□□□□ 0.53
CCDC88C-207ENST00000554051 ATP5J2-PTCD1G3V325 749 aa18.33■□□□□ 0.52
CCDC88C-207ENST00000554051 ALDH1L2Q3SY69 923 aa18.33■□□□□ 0.52
CCDC88C-207ENST00000554051 CC2D2BQ6DHV5 1058 aa18.33■□□□□ 0.52
CCDC88C-207ENST00000554051 DNAAF4Q8WXU2 420 aa18.33■□□□□ 0.52
CCDC88C-207ENST00000554051 CRAMP1Q96RY5 1269 aa18.33■□□□□ 0.52
CCDC88C-207ENST00000554051 ZBED9Q6R2W3 1325 aa18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 PCCAP05165 728 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 CCDC93Q567U6 631 aa18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 FER1L6Q2WGJ9 1857 aa18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 SLX4Q8IY92 1834 aa18.32■□□□□ 0.52
CCDC88C-207ENST00000554051 PTPRCP08575 1304 aa18.31■□□□□ 0.52
CCDC88C-207ENST00000554051 CDHR2Q9BYE9 1310 aa18.31■□□□□ 0.52
CCDC88C-207ENST00000554051 TMC4Q7Z404 712 aa18.31■□□□□ 0.52
CCDC88C-207ENST00000554051 LINS1Q8NG48 757 aa18.31■□□□□ 0.52
CCDC88C-207ENST00000554051 TMX4Q9H1E5 349 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-207ENST00000554051 G2E3Q7L622 706 aa18.3■□□□□ 0.52
CCDC88C-207ENST00000554051 CDCA7LQ96GN5 454 aa18.3■□□□□ 0.52
CCDC88C-207ENST00000554051 TAOK3Q9H2K8 898 aa18.3■□□□□ 0.52
CCDC88C-207ENST00000554051 IRS4O14654 1257 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-207ENST00000554051 DDX46Q7L014 1031 aaKnown RBP18.29■□□□□ 0.52
CCDC88C-207ENST00000554051 RTKN2Q8IZC4 609 aa18.29■□□□□ 0.52
CCDC88C-207ENST00000554051 TIAM2Q8IVF5 1701 aa18.29■□□□□ 0.52
CCDC88C-207ENST00000554051 NEURL1BA8MQ27 555 aa18.28■□□□□ 0.52
CCDC88C-207ENST00000554051 C21orf2O43822 256 aa18.28■□□□□ 0.52
CCDC88C-207ENST00000554051 SF3B3Q15393 1217 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-207ENST00000554051 FAM89AQ96GI7 184 aa18.28■□□□□ 0.52
CCDC88C-207ENST00000554051 PPEF1O14829 653 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-207ENST00000554051 IGKV5-2P06315 115 aa18.27■□□□□ 0.52
CCDC88C-207ENST00000554051 HCLS1P14317 486 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-207ENST00000554051 LMNB1P20700 586 aa18.27■□□□□ 0.52
CCDC88C-207ENST00000554051 SMC4Q9NTJ3 1288 aa18.27■□□□□ 0.52
CCDC88C-207ENST00000554051 MYH3P11055 1940 aa18.27■□□□□ 0.51
CCDC88C-207ENST00000554051 SBF1O95248 1867 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 LRRC37AA6NMS7 1700 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 ABCC4O15439 1325 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 PDE8AO60658 829 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 BBOX1O75936 387 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 CCDC152Q4G0S7 254 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 C7orf43Q8WVR3 580 aa18.26■□□□□ 0.51
CCDC88C-207ENST00000554051 KIF16BQ96L93 1317 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 NFKBIEO00221 500 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 ALDH1L1O75891 902 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 BRPF1P55201 1214 aaPredicted RBP18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 GRAPQ13588 217 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 GCKRQ14397 625 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 MRPL50Q8N5N7 158 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 GRAPLQ8TC17 118 aaPredicted RBP18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 SSH1Q8WYL5 1049 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 RNF181Q9P0P0 153 aa18.25■□□□□ 0.51
CCDC88C-207ENST00000554051 DICER1Q9UPY3 1922 aaKnown RBP18.24■□□□□ 0.51
CCDC88C-207ENST00000554051 FKBP4Q02790 459 aaKnown RBP eCLIP18.24■□□□□ 0.51
CCDC88C-207ENST00000554051 C9orf131Q5VYM1 1079 aa18.24■□□□□ 0.51
CCDC88C-207ENST00000554051 C3orf67Q6ZVT6 689 aa18.24■□□□□ 0.51
CCDC88C-207ENST00000554051 ZNF784Q8NCA9 323 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-207ENST00000554051 PSMD1Q99460 953 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms