RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 PLCB2Q00722 1185 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 TWISTNBQ3B726 338 aaPredicted RBP7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 TSPYL6Q8N831 410 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 C8orf58Q8NAV2 365 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 ATP13A2Q9NQ11 1180 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 ALS2Q96Q42 1657 aa7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 NCAPD2Q15021 1401 aa7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 TTC24A2A3L6 582 aaPredicted RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 ZBTB7BO15156 539 aaPredicted RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 MTHFSDQ2M296 383 aaKnown RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 ESCO1Q5FWF5 840 aa7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 PROSER2Q86WR7 435 aaPredicted RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 TRIM47Q96LD4 638 aa7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 IPO9Q96P70 1041 aaKnown RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 THUMPD2Q9BTF0 503 aaKnown RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 LAS1LQ9Y4W2 734 aaKnown RBP7.63□□□□□ -1.19
VIPAS39-204ENST00000553576 C1orf167Q5SNV9 1468 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 XIRP1Q702N8 1843 aaKnown RBP7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 RGPD5Q99666 1765 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 ABCC4O15439 1325 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 ANP32AP39687 249 aaKnown RBP7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 MLLT3P42568 568 aaPredicted RBP7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 C8orf34Q49A92 452 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 ARHGEF25Q86VW2 580 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 SMC5Q8IY18 1101 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 TMEM57Q8N5G2 664 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 API5Q9BZZ5 524 aaKnown RBP7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 LMO7Q8WWI1 1683 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 CAMTA1Q9Y6Y1 1673 aa7.62□□□□□ -1.19
VIPAS39-204ENST00000553576 USP19O94966 1318 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 PTPRCP08575 1304 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 GNAT3A8MTJ3 354 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 SMPD1P17405 629 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 DCTN1Q14203 1278 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 INTS3Q68E01 1043 aaKnown RBP7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 RTF1Q92541 710 aaKnown RBP7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 ORAI2Q96SN7 254 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 CRYBG1Q9Y4K1 1723 aa7.61□□□□□ -1.19
VIPAS39-204ENST00000553576 GCP02774 474 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 MCM10Q7L590 875 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 KRT28Q7Z3Y7 464 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 ITPRIPQ8IWB1 547 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 THAP11Q96EK4 314 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 ANP32EQ9BTT0 268 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 SENP2Q9HC62 589 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 COL18A1P39060 1754 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 STRCQ7RTU9 1775 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 N4BP2Q86UW6 1770 aaPredicted RBP7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 LMTK3Q96Q04 1460 aa7.6□□□□□ -1.19
VIPAS39-204ENST00000553576 MSH6P52701 1360 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 CEMIPQ8WUJ3 1361 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 PLEKHG2Q9H7P9 1386 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 ABCC6O95255 1503 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 FOXO3O43524 673 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 TAF7Q15545 349 aaPredicted RBP7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 NUTM2GQ5VZR2 741 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 C14orf37Q86TY3 774 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 SKAP1Q86WV1 359 aa7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 FAM160A2Q8N612 972 aaPredicted RBP7.59□□□□□ -1.19
VIPAS39-204ENST00000553576 SIPA1L3O60292 1781 aaPredicted RBP7.59□□□□□ -1.2
VIPAS39-204ENST00000553576 KDM3BQ7LBC6 1761 aa7.59□□□□□ -1.2
VIPAS39-204ENST00000553576 MED1Q15648 1581 aaPredicted RBP7.59□□□□□ -1.2
VIPAS39-204ENST00000553576 MAP3K5Q99683 1374 aa7.59□□□□□ -1.2
VIPAS39-204ENST00000553576 ADAMTS7Q9UKP4 1686 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 FAM181BA6NEQ2 426 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 ELL2O00472 640 aaPredicted RBP7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 ATF3P18847 181 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 RGS3P49796 1198 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 AMOTQ4VCS5 1084 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 MORN1Q5T089 497 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 NBPF6Q5VWK0 638 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 IL17REQ8NFR9 667 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 SNIP1Q8TAD8 396 aaKnown RBP7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 GCC1Q96CN9 775 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 NBPF4Q96M43 638 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 CHMP4AQ9BY43 222 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 PRDM9Q9NQV7 894 aa7.58□□□□□ -1.2
VIPAS39-204ENST00000553576 FAM208AQ9UK61 1670 aaKnown RBP7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 WNT7AO00755 349 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 HOXB7P09629 217 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 NUCB1Q02818 461 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 DDRGK1Q96HY6 314 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 TSPYL4Q9UJ04 414 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 OVOS2A0A0G2JMS6 1433 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 RGS12O14924 1447 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 TMEM94Q12767 1356 aa7.57□□□□□ -1.2
VIPAS39-204ENST00000553576 SCN11AQ9UI33 1791 aa7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 PLEKHO1Q53GL0 409 aaPredicted RBP7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 AKAP4Q5JQC9 854 aa7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 RPAP2Q8IXW5 612 aaPredicted RBP7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 PXYLP1Q8TE99 480 aa7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 NOP58Q9Y2X3 529 aaKnown RBP7.56□□□□□ -1.2
VIPAS39-204ENST00000553576 NPHP3Q7Z494 1330 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 J3QL48 77 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 ZBTB24O43167 697 aaPredicted RBP7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 LORP23490 312 aaPredicted RBP7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 KRT24Q2M2I5 525 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 CCDC30Q5VVM6 783 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 SIRT2Q8IXJ6 389 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms