RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 MAP3K2Q9Y2U5 619 aa29.21■■■□□ 2.27
TDP1-206ENST00000553569 ADCY9O60503 1353 aa29.21■■■□□ 2.27
TDP1-206ENST00000553569 DALRD3Q5D0E6 543 aaKnown RBP29.2■■■□□ 2.26
TDP1-206ENST00000553569 ZNF622Q969S3 477 aaKnown RBP eCLIP29.2■■■□□ 2.26
TDP1-206ENST00000553569 CACNA1SQ13698 1873 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 PI4KAP2A4QPH2 592 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 GRIN3BO60391 1043 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 FKBP5Q13451 457 aaPredicted RBP29.19■■■□□ 2.26
TDP1-206ENST00000553569 KSR2Q6VAB6 950 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 PI4KAP1Q8N8J0 262 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 PDZRN3Q9UPQ7 1066 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 ARFGEF1Q9Y6D6 1849 aa29.19■■■□□ 2.26
TDP1-206ENST00000553569 METTL22Q9BUU2 404 aaPredicted RBP29.18■■■□□ 2.26
TDP1-206ENST00000553569 TRMT112Q9UI30 125 aaKnown RBP29.18■■■□□ 2.26
TDP1-206ENST00000553569 RIC1Q4ADV7 1423 aa29.16■■■□□ 2.26
TDP1-206ENST00000553569 SRGNP10124 158 aa29.15■■■□□ 2.26
TDP1-206ENST00000553569 TTLL6Q8N841 843 aa29.15■■■□□ 2.26
TDP1-206ENST00000553569 GOLGB1Q14789 3259 aaKnown RBP29.15■■■□□ 2.26
TDP1-206ENST00000553569 RNF123Q5XPI4 1314 aa29.15■■■□□ 2.26
TDP1-206ENST00000553569 ZBED9Q6R2W3 1325 aa29.15■■■□□ 2.26
TDP1-206ENST00000553569 SH3TC1Q8TE82 1336 aa29.15■■■□□ 2.26
TDP1-206ENST00000553569 CHD4Q14839 1912 aa29.14■■■□□ 2.26
TDP1-206ENST00000553569 SYNE4Q8N205 404 aa29.14■■■□□ 2.26
TDP1-206ENST00000553569 MASTLQ96GX5 879 aa29.14■■■□□ 2.26
TDP1-206ENST00000553569 TRIM28Q13263 835 aaKnown RBP29.13■■■□□ 2.25
TDP1-206ENST00000553569 STYK1Q6J9G0 422 aa29.13■■■□□ 2.25
TDP1-206ENST00000553569 BCL2L13Q9BXK5 485 aa29.13■■■□□ 2.25
TDP1-206ENST00000553569 LAMB2P55268 1798 aa29.12■■■□□ 2.25
TDP1-206ENST00000553569 KLRG2A4D1S0 409 aaPredicted RBP29.12■■■□□ 2.25
TDP1-206ENST00000553569 NEXNQ0ZGT2 675 aa29.12■■■□□ 2.25
TDP1-206ENST00000553569 RTL5Q5HYW3 569 aaPredicted RBP29.12■■■□□ 2.25
TDP1-206ENST00000553569 SSH1Q8WYL5 1049 aa29.12■■■□□ 2.25
TDP1-206ENST00000553569 DDX60Q8IY21 1712 aaKnown RBP29.11■■■□□ 2.25
TDP1-206ENST00000553569 HCLS1P14317 486 aaPredicted RBP29.11■■■□□ 2.25
TDP1-206ENST00000553569 NPR1P16066 1061 aa29.11■■■□□ 2.25
TDP1-206ENST00000553569 C3orf67Q6ZVT6 689 aa29.11■■■□□ 2.25
TDP1-206ENST00000553569 DNAAF4Q8WXU2 420 aa29.11■■■□□ 2.25
TDP1-206ENST00000553569 FAM89AQ96GI7 184 aa29.11■■■□□ 2.25
TDP1-206ENST00000553569 CWC25Q9NXE8 425 aaPredicted RBP29.11■■■□□ 2.25
TDP1-206ENST00000553569 MRPL50Q8N5N7 158 aaKnown RBP29.1■■■□□ 2.25
TDP1-206ENST00000553569 CCDC191Q8NCU4 936 aa29.1■■■□□ 2.25
TDP1-206ENST00000553569 CNKSR1Q969H4 720 aa29.1■■■□□ 2.25
TDP1-206ENST00000553569 SLX4Q8IY92 1834 aa29.1■■■□□ 2.25
TDP1-206ENST00000553569 F6X3S4 739 aa29.09■■■□□ 2.25
TDP1-206ENST00000553569 IGKV5-2P06315 115 aa29.09■■■□□ 2.25
TDP1-206ENST00000553569 CT47B1P0C2W7 299 aaPredicted RBP29.09■■■□□ 2.25
TDP1-206ENST00000553569 SLC10A5Q5PT55 438 aa29.09■■■□□ 2.25
TDP1-206ENST00000553569 RPGRQ92834 1020 aaKnown RBP29.09■■■□□ 2.25
TDP1-206ENST00000553569 NLRP3Q96P20 1036 aa29.09■■■□□ 2.25
TDP1-206ENST00000553569 ZNF219Q9P2Y4 722 aaPredicted RBP29.09■■■□□ 2.25
TDP1-206ENST00000553569 CWF19L2Q2TBE0 894 aaKnown RBP29.08■■■□□ 2.25
TDP1-206ENST00000553569 CRY2Q49AN0 593 aa29.08■■■□□ 2.25
TDP1-206ENST00000553569 ARHGAP27Q6ZUM4 889 aa29.08■■■□□ 2.25
TDP1-206ENST00000553569 SMC4Q9NTJ3 1288 aa29.08■■■□□ 2.25
TDP1-206ENST00000553569 PRPF40BQ6NWY9 871 aaKnown RBP29.07■■■□□ 2.24
TDP1-206ENST00000553569 UTRNP46939 3433 aa29.06■■■□□ 2.24
TDP1-206ENST00000553569 ALDH1L2Q3SY69 923 aa29.06■■■□□ 2.24
TDP1-206ENST00000553569 ZBTB38Q8NAP3 1195 aaPredicted RBP29.06■■■□□ 2.24
TDP1-206ENST00000553569 JARID2Q92833 1246 aaPredicted RBP29.06■■■□□ 2.24
TDP1-206ENST00000553569 NEURL1BA8MQ27 555 aa29.05■■■□□ 2.24
TDP1-206ENST00000553569 IRS4O14654 1257 aaPredicted RBP29.04■■■□□ 2.24
TDP1-206ENST00000553569 C21orf2O43822 256 aa29.03■■■□□ 2.24
TDP1-206ENST00000553569 PCCAP05165 728 aaPredicted RBP29.03■■■□□ 2.24
TDP1-206ENST00000553569 YY1P25490 414 aa29.03■■■□□ 2.24
TDP1-206ENST00000553569 LINS1Q8NG48 757 aa29.02■■■□□ 2.24
TDP1-206ENST00000553569 RBM17Q96I25 401 aaKnown RBP29.02■■■□□ 2.24
TDP1-206ENST00000553569 ALDH1B1P30837 517 aa29.01■■■□□ 2.23
TDP1-206ENST00000553569 SLC4A10Q6U841 1118 aa29.01■■■□□ 2.23
TDP1-206ENST00000553569 PTPRCP08575 1304 aa29■■■□□ 2.23
TDP1-206ENST00000553569 HOXA10P31260 410 aaPredicted RBP29■■■□□ 2.23
TDP1-206ENST00000553569 RARSP54136 660 aaKnown RBP28.99■■■□□ 2.23
TDP1-206ENST00000553569 RASSF7Q02833 373 aa28.99■■■□□ 2.23
TDP1-206ENST00000553569 GCKRQ14397 625 aa28.99■■■□□ 2.23
TDP1-206ENST00000553569 BEND3Q5T5X7 828 aa28.98■■■□□ 2.23
TDP1-206ENST00000553569 CRAMP1Q96RY5 1269 aa28.98■■■□□ 2.23
TDP1-206ENST00000553569 ABCC4O15439 1325 aa28.97■■■□□ 2.23
TDP1-206ENST00000553569 UBE3BQ7Z3V4 1068 aa28.97■■■□□ 2.23
TDP1-206ENST00000553569 TAF1P21675 1872 aa28.97■■■□□ 2.23
TDP1-206ENST00000553569 CDHR2Q9BYE9 1310 aa28.96■■■□□ 2.23
TDP1-206ENST00000553569 FER1L6Q2WGJ9 1857 aa28.96■■■□□ 2.23
TDP1-206ENST00000553569 HSP90B1P14625 803 aaKnown RBP28.96■■■□□ 2.23
TDP1-206ENST00000553569 OLFM4Q6UX06 510 aa28.96■■■□□ 2.23
TDP1-206ENST00000553569 DDX46Q7L014 1031 aaKnown RBP28.96■■■□□ 2.23
TDP1-206ENST00000553569 MYH3P11055 1940 aa28.95■■■□□ 2.23
TDP1-206ENST00000553569 PPEF1O14829 653 aaPredicted RBP28.95■■■□□ 2.22
TDP1-206ENST00000553569 PDE8AO60658 829 aa28.94■■■□□ 2.22
TDP1-206ENST00000553569 SF3B3Q15393 1217 aaKnown RBP28.94■■■□□ 2.22
TDP1-206ENST00000553569 SOGA3Q5TF21 947 aa28.94■■■□□ 2.22
TDP1-206ENST00000553569 C7orf43Q8WVR3 580 aa28.94■■■□□ 2.22
TDP1-206ENST00000553569 NOB1Q9ULX3 412 aaKnown RBP28.94■■■□□ 2.22
TDP1-206ENST00000553569 SBF1O95248 1867 aa28.93■■■□□ 2.22
TDP1-206ENST00000553569 H7C1W4 665 aa28.93■■■□□ 2.22
TDP1-206ENST00000553569 NFKBIEO00221 500 aa28.93■■■□□ 2.22
TDP1-206ENST00000553569 CCDC93Q567U6 631 aa28.93■■■□□ 2.22
TDP1-206ENST00000553569 SRCIN1Q9C0H9 1055 aa28.93■■■□□ 2.22
TDP1-206ENST00000553569 SLC51AQ86UW1 340 aa28.92■■■□□ 2.22
TDP1-206ENST00000553569 CCDC85AQ96PX6 553 aaPredicted RBP28.92■■■□□ 2.22
TDP1-206ENST00000553569 CCDC88AQ3V6T2 1871 aa28.91■■■□□ 2.22
TDP1-206ENST00000553569 KIF16BQ96L93 1317 aa28.91■■■□□ 2.22
TDP1-206ENST00000553569 ALDH1L1O75891 902 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms