RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 ERVV-1B6SEH8 477 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 FXR2P51116 673 aaKnown RBP eCLIP12.35□□□□□ -0.43
TMEM260-204ENST00000553335 HSP90AB3PQ58FF7 597 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 PI4KAP1Q8N8J0 262 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 DNAAF4Q8WXU2 420 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 NARFQ9UHQ1 456 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 ZNF652Q9Y2D9 606 aa12.35□□□□□ -0.43
TMEM260-204ENST00000553335 PXDNLA1KZ92 1463 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 SRCAPQ6ZRS2 3230 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 PLIN1O60240 522 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 PRKCSHP14314 528 aaPredicted RBP12.34□□□□□ -0.43
TMEM260-204ENST00000553335 TRIM27P14373 513 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 NEXNQ0ZGT2 675 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 FTSJ3Q8IY81 847 aaKnown RBP12.34□□□□□ -0.43
TMEM260-204ENST00000553335 ZBTB3Q9H5J0 574 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 MAP3K2Q9Y2U5 619 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 RNF123Q5XPI4 1314 aa12.34□□□□□ -0.43
TMEM260-204ENST00000553335 ADCY9O60503 1353 aa12.33□□□□□ -0.44
TMEM260-204ENST00000553335 PDE3AQ14432 1141 aa12.33□□□□□ -0.44
TMEM260-204ENST00000553335 R3HDM1Q15032 1099 aaKnown RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 SLC4A10Q6U841 1118 aa12.33□□□□□ -0.44
TMEM260-204ENST00000553335 CLEC4GQ6UXB4 293 aa12.33□□□□□ -0.44
TMEM260-204ENST00000553335 GIGYF2Q6Y7W6 1299 aaKnown RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 DZIP1LQ8IYY4 767 aaKnown RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 METTL22Q9BUU2 404 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 ANO8Q9HCE9 1232 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 PNPLA7Q6ZV29 1317 aa12.33□□□□□ -0.44
TMEM260-204ENST00000553335 USP42Q9H9J4 1324 aaKnown RBP12.33□□□□□ -0.44
TMEM260-204ENST00000553335 F6X3S4 739 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 CAMTA2O94983 1202 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 CCT4P50991 539 aaKnown RBP12.32□□□□□ -0.44
TMEM260-204ENST00000553335 USPL1Q5W0Q7 1092 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 SMIM5Q71RC9 77 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 CLUAP1Q96AJ1 413 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 MYD88Q99836 296 aa12.32□□□□□ -0.44
TMEM260-204ENST00000553335 ATP10DQ9P241 1426 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 TCIRG1Q13488 830 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 HLFQ16534 295 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 AMIGO3Q86WK7 504 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 COL23A1Q86Y22 540 aaPredicted RBP12.31□□□□□ -0.44
TMEM260-204ENST00000553335 SRCIN1Q9C0H9 1055 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 SRP68Q9UHB9 627 aaKnown RBP12.31□□□□□ -0.44
TMEM260-204ENST00000553335 ABCC4O15439 1325 aa12.31□□□□□ -0.44
TMEM260-204ENST00000553335 PDAP1Q13442 181 aaKnown RBP12.3□□□□□ -0.44
TMEM260-204ENST00000553335 LINS1Q8NG48 757 aa12.3□□□□□ -0.44
TMEM260-204ENST00000553335 TNNQ9UQP3 1299 aa12.3□□□□□ -0.44
TMEM260-204ENST00000553335 CASZ1Q86V15 1759 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 ALDH1L1O75891 902 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 BEND3Q5T5X7 828 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 INTS3Q68E01 1043 aaKnown RBP12.29□□□□□ -0.44
TMEM260-204ENST00000553335 NLGN1Q8N2Q7 840 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 TMEM57Q8N5G2 664 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 PANK1Q8TE04 598 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
TMEM260-204ENST00000553335 CHMP4BQ9H444 224 aaKnown RBP12.29□□□□□ -0.44
TMEM260-204ENST00000553335 COL24A1Q17RW2 1714 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 NEFLP07196 543 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 GYS1P13807 737 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 TRIM28Q13263 835 aaKnown RBP12.28□□□□□ -0.44
TMEM260-204ENST00000553335 PARP10Q53GL7 1025 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 ITPRIPQ8IWB1 547 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 ZNF34Q8IZ26 560 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 CCDC191Q8NCU4 936 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 ISCA1Q9BUE6 129 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 BCL2L12Q9HB09 334 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 DDX19BQ9UMR2 479 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 PCDHB8Q9UN66 801 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 NIP7Q9Y221 180 aaKnown RBP eCLIP12.28□□□□□ -0.44
TMEM260-204ENST00000553335 PCDHB13Q9Y5F0 798 aa12.28□□□□□ -0.44
TMEM260-204ENST00000553335 NEURL1BA8MQ27 555 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 IGKV5-2P06315 115 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 GPTP24298 496 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 MVPQ14764 893 aaKnown RBP12.27□□□□□ -0.45
TMEM260-204ENST00000553335 CWF19L2Q2TBE0 894 aaKnown RBP12.27□□□□□ -0.45
TMEM260-204ENST00000553335 C20orf194Q5TEA3 1177 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 TBC1D9BQ66K14 1250 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 PPP1R42Q7Z4L9 355 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 SETDB2Q96T68 719 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 CWC25Q9NXE8 425 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-204ENST00000553335 COG6Q9Y2V7 657 aa12.27□□□□□ -0.45
TMEM260-204ENST00000553335 IBTKQ9P2D0 1353 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-204ENST00000553335 RLBP1P12271 317 aa12.26□□□□□ -0.45
TMEM260-204ENST00000553335 NBR1Q14596 966 aa12.26□□□□□ -0.45
TMEM260-204ENST00000553335 BICDL1Q6ZP65 573 aa12.26□□□□□ -0.45
TMEM260-204ENST00000553335 ZNF579Q8NAF0 562 aaKnown RBP12.26□□□□□ -0.45
TMEM260-204ENST00000553335 C9orf78Q9NZ63 289 aaPredicted RBP12.26□□□□□ -0.45
TMEM260-204ENST00000553335 GCKRQ14397 625 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 TPRNQ4KMQ1 711 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 NLRP10Q86W26 655 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 NYXQ9GZU5 481 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 HDAC5Q9UQL6 1122 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 CARMIL3Q8ND23 1372 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 LAMB2P55268 1798 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 MYH3P11055 1940 aa12.25□□□□□ -0.45
TMEM260-204ENST00000553335 NPHP1O15259 732 aa12.24□□□□□ -0.45
TMEM260-204ENST00000553335 GNAI3P08754 354 aa12.24□□□□□ -0.45
TMEM260-204ENST00000553335 TM4SF1P30408 202 aa12.24□□□□□ -0.45
TMEM260-204ENST00000553335 NFIXQ14938 502 aa12.24□□□□□ -0.45
TMEM260-204ENST00000553335 UBN2Q6ZU65 1347 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms