RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 KSR2Q6VAB6 950 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 PPP1R42Q7Z4L9 355 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 MYD88Q99836 296 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 UTP14AQ9BVJ6 771 aaKnown RBP18.07■□□□□ 0.48
PTCH1-226ENST00000553011 MAP3K2Q9Y2U5 619 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 LAMB2P55268 1798 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 FKBP5Q13451 457 aaPredicted RBP18.06■□□□□ 0.48
PTCH1-226ENST00000553011 METTL22Q9BUU2 404 aaPredicted RBP18.06■□□□□ 0.48
PTCH1-226ENST00000553011 GOLGB1Q14789 3259 aaKnown RBP18.06■□□□□ 0.48
PTCH1-226ENST00000553011 CHD4Q14839 1912 aa18.06■□□□□ 0.48
PTCH1-226ENST00000553011 H0YIN7 160 aa18.05■□□□□ 0.48
PTCH1-226ENST00000553011 SYNE4Q8N205 404 aa18.05■□□□□ 0.48
PTCH1-226ENST00000553011 SSH1Q8WYL5 1049 aa18.05■□□□□ 0.48
PTCH1-226ENST00000553011 DDX60Q8IY21 1712 aaKnown RBP18.05■□□□□ 0.48
PTCH1-226ENST00000553011 TRIM28Q13263 835 aaKnown RBP18.04■□□□□ 0.48
PTCH1-226ENST00000553011 MRPL50Q8N5N7 158 aaKnown RBP18.04■□□□□ 0.48
PTCH1-226ENST00000553011 BCL2L13Q9BXK5 485 aa18.04■□□□□ 0.48
PTCH1-226ENST00000553011 PIM2Q9P1W9 311 aa18.04■□□□□ 0.48
PTCH1-226ENST00000553011 TRMT112Q9UI30 125 aaKnown RBP18.04■□□□□ 0.48
PTCH1-226ENST00000553011 BCS1LQ9Y276 419 aa18.04■□□□□ 0.48
PTCH1-226ENST00000553011 SLX4Q8IY92 1834 aa18.03■□□□□ 0.48
PTCH1-226ENST00000553011 ZNF622Q969S3 477 aaKnown RBP eCLIP18.03■□□□□ 0.48
PTCH1-226ENST00000553011 KLRG2A4D1S0 409 aaPredicted RBP18.02■□□□□ 0.48
PTCH1-226ENST00000553011 F6X3S4 739 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 IGKV5-2P06315 115 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 CT47B1P0C2W7 299 aaPredicted RBP18.02■□□□□ 0.48
PTCH1-226ENST00000553011 SRGNP10124 158 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 RIC1Q4ADV7 1423 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 DNAAF4Q8WXU2 420 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 PDZRN3Q9UPQ7 1066 aa18.02■□□□□ 0.48
PTCH1-226ENST00000553011 RNF123Q5XPI4 1314 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 SH3TC1Q8TE82 1336 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 HCLS1P14317 486 aaPredicted RBP18.01■□□□□ 0.47
PTCH1-226ENST00000553011 NEXNQ0ZGT2 675 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 DALRD3Q5D0E6 543 aaKnown RBP18.01■□□□□ 0.47
PTCH1-226ENST00000553011 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
PTCH1-226ENST00000553011 C3orf67Q6ZVT6 689 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 FAM89AQ96GI7 184 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 SMC4Q9NTJ3 1288 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 TAF1P21675 1872 aa18.01■□□□□ 0.47
PTCH1-226ENST00000553011 CWF19L2Q2TBE0 894 aaKnown RBP18■□□□□ 0.47
PTCH1-226ENST00000553011 ALDH1L2Q3SY69 923 aa18■□□□□ 0.47
PTCH1-226ENST00000553011 SLC10A5Q5PT55 438 aa18■□□□□ 0.47
PTCH1-226ENST00000553011 TTLL6Q8N841 843 aa18■□□□□ 0.47
PTCH1-226ENST00000553011 CCDC191Q8NCU4 936 aa18■□□□□ 0.47
PTCH1-226ENST00000553011 MASTLQ96GX5 879 aa18■□□□□ 0.47
PTCH1-226ENST00000553011 CWC25Q9NXE8 425 aaPredicted RBP18■□□□□ 0.47
PTCH1-226ENST00000553011 GRIN3BO60391 1043 aa17.99■□□□□ 0.47
PTCH1-226ENST00000553011 STYK1Q6J9G0 422 aa17.99■□□□□ 0.47
PTCH1-226ENST00000553011 JARID2Q92833 1246 aaPredicted RBP17.99■□□□□ 0.47
PTCH1-226ENST00000553011 MYH3P11055 1940 aa17.99■□□□□ 0.47
PTCH1-226ENST00000553011 UTRNP46939 3433 aa17.98■□□□□ 0.47
PTCH1-226ENST00000553011 NEURL1BA8MQ27 555 aa17.98■□□□□ 0.47
PTCH1-226ENST00000553011 NPR1P16066 1061 aa17.98■□□□□ 0.47
PTCH1-226ENST00000553011 RARSP54136 660 aaKnown RBP17.98■□□□□ 0.47
PTCH1-226ENST00000553011 CRY2Q49AN0 593 aa17.98■□□□□ 0.47
PTCH1-226ENST00000553011 PCCAP05165 728 aaPredicted RBP17.97■□□□□ 0.47
PTCH1-226ENST00000553011 ZBTB38Q8NAP3 1195 aaPredicted RBP17.97■□□□□ 0.47
PTCH1-226ENST00000553011 CNKSR1Q969H4 720 aa17.97■□□□□ 0.47
PTCH1-226ENST00000553011 NLRP3Q96P20 1036 aa17.97■□□□□ 0.47
PTCH1-226ENST00000553011 CCDC88AQ3V6T2 1871 aa17.97■□□□□ 0.47
PTCH1-226ENST00000553011 IRS4O14654 1257 aaPredicted RBP17.96■□□□□ 0.47
PTCH1-226ENST00000553011 PRPF40BQ6NWY9 871 aaKnown RBP17.96■□□□□ 0.47
PTCH1-226ENST00000553011 LINS1Q8NG48 757 aa17.96■□□□□ 0.47
PTCH1-226ENST00000553011 ZNF219Q9P2Y4 722 aaPredicted RBP17.96■□□□□ 0.47
PTCH1-226ENST00000553011 SBF1O95248 1867 aa17.95■□□□□ 0.46
PTCH1-226ENST00000553011 FER1L6Q2WGJ9 1857 aa17.95■□□□□ 0.46
PTCH1-226ENST00000553011 BEND3Q5T5X7 828 aa17.95■□□□□ 0.46
PTCH1-226ENST00000553011 SLC4A10Q6U841 1118 aa17.95■□□□□ 0.46
PTCH1-226ENST00000553011 RPGRQ92834 1020 aaKnown RBP17.95■□□□□ 0.46
PTCH1-226ENST00000553011 PTPRCP08575 1304 aa17.95■□□□□ 0.46
PTCH1-226ENST00000553011 HOXA10P31260 410 aaPredicted RBP17.94■□□□□ 0.46
PTCH1-226ENST00000553011 GCKRQ14397 625 aa17.94■□□□□ 0.46
PTCH1-226ENST00000553011 ARHGAP27Q6ZUM4 889 aa17.94■□□□□ 0.46
PTCH1-226ENST00000553011 C21orf2O43822 256 aa17.93■□□□□ 0.46
PTCH1-226ENST00000553011 BRPF1P55201 1214 aaPredicted RBP17.93■□□□□ 0.46
PTCH1-226ENST00000553011 UBE3BQ7Z3V4 1068 aa17.93■□□□□ 0.46
PTCH1-226ENST00000553011 NOB1Q9ULX3 412 aaKnown RBP17.93■□□□□ 0.46
PTCH1-226ENST00000553011 CDHR2Q9BYE9 1310 aa17.93■□□□□ 0.46
PTCH1-226ENST00000553011 H7C1W4 665 aa17.92■□□□□ 0.46
PTCH1-226ENST00000553011 BCAR3O75815 825 aa17.92■□□□□ 0.46
PTCH1-226ENST00000553011 ALDH1B1P30837 517 aa17.92■□□□□ 0.46
PTCH1-226ENST00000553011 RBM17Q96I25 401 aaKnown RBP17.92■□□□□ 0.46
PTCH1-226ENST00000553011 YTHDC1Q96MU7 727 aaKnown RBP17.92■□□□□ 0.46
PTCH1-226ENST00000553011 CRAMP1Q96RY5 1269 aa17.92■□□□□ 0.46
PTCH1-226ENST00000553011 COL4A1P02462 1669 aa17.91■□□□□ 0.46
PTCH1-226ENST00000553011 SRCIN1Q9C0H9 1055 aa17.91■□□□□ 0.46
PTCH1-226ENST00000553011 ABCC4O15439 1325 aa17.91■□□□□ 0.46
PTCH1-226ENST00000553011 PDE8AO60658 829 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 ALDH1L1O75891 902 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 CASP7P55210 303 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 SF3B3Q15393 1217 aaKnown RBP17.9■□□□□ 0.46
PTCH1-226ENST00000553011 OLFM4Q6UX06 510 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 SLC51AQ86UW1 340 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 C7orf43Q8WVR3 580 aa17.9■□□□□ 0.46
PTCH1-226ENST00000553011 RASSF7Q02833 373 aa17.89■□□□□ 0.45
PTCH1-226ENST00000553011 DDX46Q7L014 1031 aaKnown RBP17.89■□□□□ 0.45
PTCH1-226ENST00000553011 CCDC85AQ96PX6 553 aaPredicted RBP17.89■□□□□ 0.45
PTCH1-226ENST00000553011 KIF16BQ96L93 1317 aa17.89■□□□□ 0.45
PTCH1-226ENST00000553011 SPEF2Q9C093 1822 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms